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tahashmi authored Jun 3, 2021
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SVCall is a scalable, parallel and efficient implementation of next generation sequencing data pre-processing and variant calling workflows. Our design tightly integrates most pre-processing workflow stages, using Spark built-in functions to sort reads by coordinates, and mark duplicates efficiently. A cluster scaled DeepVariant for both CPU-only and CPU+GPU clusters is also integrated in this workflow.

This approach can be used on following infraturcture:
This approach can be used on following infraturcture(s):

##### 1. Slurm based Cluster
##### 2. Google GCP DataProc Cluster
##### 1. Slurm based Cluster [1](https://github.com/abs-tudelft/SVCall/blob/main/README.md#1-slurm-based-cluster-1)
##### 2. Google GCP DataProc Cluster [2]()

# 1. Slurm based Cluster

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