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tahashmi authored Jul 25, 2021
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# Variant Calling at Scale

SVCall is a scalable, parallel and efficient implementation of next generation sequencing data pre-processing and variant calling workflows. Our design tightly integrates most pre-processing workflow stages, using Spark built-in functions to sort reads by coordinates, and mark duplicates efficiently. A cluster scaled DeepVariant for both CPU-only and CPU+GPU clusters is also integrated in this workflow.
Variant Calling at Scale is a scalable, parallel and efficient implementation of next generation sequencing data pre-processing and variant calling workflows. Our design tightly integrates most pre-processing workflow stages, using Spark built-in functions to sort reads by coordinates, and mark duplicates efficiently. A cluster scaled DeepVariant for both CPU-only and CPU+GPU clusters is also integrated in this workflow.


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