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Update README.md
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tahashmi authored Jun 4, 2021
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Expand Up @@ -166,6 +166,7 @@ gcloud dataproc jobs submit pyspark --region=us-central1 --cluster=cluster-555
```
4. Repeat part `4` for merging VCFs and generating accuracy results using `hap.py`

The output should be like this:
DeepVariant:
```
Type Filter TRUTH.TOTAL TRUTH.TP TRUTH.FN QUERY.TOTAL QUERY.FP QUERY.UNK FP.gt METRIC.Recall METRIC.Precision METRIC.Frac_NA METRIC.F1_Score TRUTH.TOTAL.TiTv_ratio QUERY.TOTAL.TiTv_ratio TRUTH.TOTAL.het_hom_ratio QUERY.TOTAL.het_hom_ratio
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