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General tools for genomic analyses.
Interact with your documents using the power of GPT, 100% privately, no data leaks
A master thesis on using Graph Neural Networks and Network Analysis approach in morphological profiling of chemical perturbated cells
A Nextflow workflow for QC, evaluation, and profiling of metagenomic samples using short- and long-read technologies
Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
Metabolic modeling tutorial for EMBO practical course: Metabolite and species dynamics in microbial communities 2022
Sparse InversE Covariance estimation for Ecological Association and Statistical Inference
Tutorials on phylogenetic and phylogenomic inference
Bioinformatics one-liner for 100 days
A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes
Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.
A Library of various cybersecurity resources
Repository that contains all the data, code and manuscript files for a paper that explores the use of GAMs in biomedical research.
Intermediate-Advanced shell for Bioinformatics
Repository for Bioinformatics scripts and basic programs developed by L.M.C
❗ This is a read-only mirror of the CRAN R package repository. rPython — Package Allowing R to Call Python. Homepage: http://rpython.r-forge.r-project.org/
tools in python and R for analyzing biological count data, especially from single cell RNAseq
Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber
12 weeks, 26 lessons, 52 quizzes, classic Machine Learning for all
🧬 gget enables efficient querying of genomic reference databases
Plot voltage-temperature from an Osan Pathfinder SQLite database file
Miscellaneous scripts for applications of PacBio systems