Skip to content

Commit

Permalink
code restructuring and read me
Browse files Browse the repository at this point in the history
  • Loading branch information
shayansiddiqui committed Oct 13, 2019
1 parent 2b82bb9 commit bf9e249
Show file tree
Hide file tree
Showing 161 changed files with 621 additions and 1,369 deletions.
40 changes: 36 additions & 4 deletions README.md
Original file line number Diff line number Diff line change
@@ -1,10 +1,42 @@
# Few-shot segmentation with Fully ConvNets
# Squeeze \& Excite'Guided Few-Shot Segmentation of Volumetric Images

PyTorch Implementation
This project contains the source code for training and evaluation for all the experiments of the aforementioned work. Root directory contains the neural network file 'few_shot_segmentaion.py' and the relevant 'solver.py' for the proposed method.

Coded by: Abhijit Guha Roy and Shayan Siddiqui (https://github.com/shayansiddiqui)
## Getting Started

Under Developement
### Pre-requisites

You need to have following in order for this library to work as expected
1. python >= 3.5
2. pip >= 19.0
3. pytorch >= 1.0.0
4. numpy >= 1.14.0
5. nn-common-modules >=1.0 (https://github.com/ai-med/nn-common-modules, A collection of commonly used code modules in deep learning. Follow this link to know more about installation and usage)
6. Squeeze and Excitation >=1.0 (https://github.com/ai-med/squeeze_and_excitation, Follow this link to know more about installation and usage)
7. nn-additional-losses >=1.0 (https://github.com/ai-med/nn-additional-losses, A collection of losses not part of pytorch standard library particularly useful for segmentation task. Follow this link to know more about installation and usage)

### Training your model

```
python run.py --mode=train --device=device_id
```

### Evaluating your model

```
python run.py --mode=eval
```

## Code Authors

* **Shayan Ahmad Siddiqui** - [shayansiddiqui](https://github.com/shayansiddiqui)
* **Abhijit Guha Roy** - [abhi4ssj](https://github.com/abhi4ssj)


## Help us improve
Let us know if you face any issues. You are always welcome to report new issues and bugs and also suggest further improvements. And if you like our work hit that start button on top. Enjoy :)

##

If you use this code, please cite:

Expand Down
319 changes: 0 additions & 319 deletions WorkingModel6.py

This file was deleted.

Loading

0 comments on commit bf9e249

Please sign in to comment.