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Instructions for Reproducible Materials

Organization

  • Bash script (batch.sh): automate the execution of all numerical simulation studies
  • R scripts (.R): implement baseline methods, evaluation metrics, simulation studies, real-data analysis of the congressional voting dataset
  • Data files (.csv): for real-world data analysis. It is available at Dropbox.

File Descriptions

Main R scripts

  • simu_degree.R — empirical sample complexity analysis with respect to the degree.
  • simu_beta.R — empirical sample complexity analysis with respect to the maximum signal.
  • simu_high.R — experiments for high-dimensional cases.
  • simu_p.R — empirical sample complexity analysis with respect to the dimension.
  • simu_ws.R — empirical sample complexity analysis with respect to the weakest signal.
  • DataAnalysis.R — real-data analysis: data cleaning, estimation of the graphical structure among senators, and visualization.

Utility R scripts (automatically used by the main scripts)

  • simulation_main.R — runs one method on a given simulated dataset.
  • method_implementation.R — implementations of baseline methods (RPLE, RISE, logRISE, ELASSO, RLRF).
  • evaluation.R — evaluation metrics (e.g., Frobenius norm, true positive rate).

Reproducing Results

The scripts reproduce the results presented in the paper as follows:

  • Figure 1 and Table S1simu_degree.R
  • Figure 2 and Figure S1simu_beta.R
  • Figure 3 and Figure S2simu_high.R
  • Figure S3simu_p.R
  • Figure S4simu_ws.R
  • Figure 4DataAnalysis.R

The simplest procedure on reproduction:

  1. Use the provided bash scripts (batch.sh) to execute the full set of simulation automatically.
  2. Run DataAnalysis.R to reproduce the real-data analysis (Figure 4).

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[JASA] Reconstruct Ising Model with Global Optimality via SLIDE

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