fasta file containing only "yes" classified reads

[manuss11]

Hello,

I want to obtain a fasta file containing only those sequences classified as 16S. I noticed that rRNA sensor creates an outpup fasta file with the sequences that satisfy the length threshold, but not for what I said above. Is it possible to to so?

Thanks a lot

[aaschaffer]

Hello manus11,

This package (rRNA_sensor) was a stepping stone towards a much more comprehensive package called ribosensor (https://github.com/nawrockie/ribosensor_wrapper), which includes i) the functionality of rRNA_sensor) ii) the output functionality you requested and iii) more capabilities to recognize different classes of structural rRNAs. ribosensor was developed primarily by my colleague Eric Nawrocki (GitHub userid nawrockie). It will be preferable if you communicate with both of us by regular e-mail at

Alejandro.schaffer@nih.gov

Eric.Nawrocki@nih.gov

[nawrockie]

Hi manus11,

The github repo for ribosensor recently changed to:

https://github.com/nawrockie/ribovore

Please see that repo.

Eric

[manuss11]

Thanks a lot to both of you!

…

________________________________ De: Eric Nawrocki <notifications@github.com> Enviado: jueves, enero 17, 2019 4:26 p. m. Para: aaschaffer/rRNA_sensor CC: manuss11; Author Asunto: Re: [aaschaffer/rRNA_sensor] fasta file containing only "yes" classified reads (#2) Hi manus11, The github repo for ribosensor recently changed to: https://github.com/nawrockie/ribovore Please see that repo. Eric — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub<#2 (comment)>, or mute the thread<https://github.com/notifications/unsubscribe-auth/Am3noSR6bFgi1o71mdxw9j6dC9e53_KUks5vEJYIgaJpZM4aFOjo>.

[nawrockie]

I should've mentioned before. The 00README.txt documentation should be updated. I'm doing that now. If you don't want to wait, by all means try to get it running, but let me know if you have problems.

[manuss11]

Ok, i'll try. Thanks again.

…

________________________________ De: Eric Nawrocki <notifications@github.com> Enviado: jueves, enero 17, 2019 5:27 p. m. Para: aaschaffer/rRNA_sensor CC: manuss11; Author Asunto: Re: [aaschaffer/rRNA_sensor] fasta file containing only "yes" classified reads (#2) I should've mentioned before. The 00README.txt documentation should be updated. I'm doing that now. If you don't want to wait, by all means try to get it running, but let me know if you have problems. — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub<#2 (comment)>, or mute the thread<https://github.com/notifications/unsubscribe-auth/Am3nofn2OXmXAkgC3EUBTJRU0HYZr7f5ks5vEKSBgaJpZM4aFOjo>.