What's Changed
- Improved TFN and MACE implementation by @chaitjo in #38
- Reduce number of layers for TFN model by @chaitjo in #40
- Add preliminary ESM baseline by @amorehead in #33
- Add configs and optional post embedding MLP for ESM encoder by @chaitjo in #41
- Bump gevent from 23.9.0.post1 to 23.9.1 by @dependabot in #42
- Add fix for scheduler initialization with FoldComp datasets by @amorehead in #43
- Update available encoders by @chaitjo in #46
- Update sequence encoder title by @chaitjo in #47
- Wire up argument for
create_example_batch
by @amorehead in #50 - Add UMAP embedding visualisation script by @amorehead in #55
- Fix tuple iteration in the
ProteinDataset
'sprocess
method by @amorehead in #52 - Fix minor virtual angle feature documentation by @chaitjo in #63
- Linting and updates by @a-r-j in #53
- Version bump for 0.2.5 release by @a-r-j in #64
- Fix
orientation
batching by @amorehead in #58
Full Changelog: v0.2.4...v0.2.5