Skip to content

Commit

Permalink
minor commit with R studio
Browse files Browse the repository at this point in the history
  • Loading branch information
ZW-xjtlu committed Apr 24, 2018
1 parent 96cde0c commit 2966591
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions R/GOEA.R
Original file line number Diff line number Diff line change
Expand Up @@ -15,8 +15,8 @@
#' @param pvalue_correction method used for multiple hypothesis adjustment, can be one in "holm", "hochberg", "hommel", "bonferroni", "BH", "BY","fdr", and "none".
#' @param interpret_term whether to let the GO term readable, default FALSE.
#' @param show_gene_name whether to attach readable gene names for each GO term, default FALSE.
#' @param GO_Slim Wheather to run GSEA only on GO slim terms (a certain subset to GO terms), default FALSE.
#' @param Slim_ss A character sting of GO terms that define the scope of GO Slim. if not provided, the GO slim would be the generic subset defined in : \url{http://geneontology.org/ontology/subsets/goslim_generic.obo}
#' @param GO_Slim wheather to run GSEA only on GO slim terms (a certain subset to GO terms), default FALSE.
#' @param Slim_ss a character sting of GO terms that define the scope of GO Slim. if not provided, the GO slim would be the generic subset defined in : \url{http://geneontology.org/ontology/subsets/goslim_generic.obo}
#' @param Exclude_self whether the GO slim terms of its own category i.e. remove terms of c("GO:0008150","GO:0005575","GO:0003674"), default TRUE; only applied when GO_Slim = TRUE.
#'
#' @importFrom AnnotationDbi select Term
Expand Down

0 comments on commit 2966591

Please sign in to comment.