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Retain all genes in the reference
Shao, Xin edited this page Oct 26, 2022
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When the genes are different between ST data and scRNA-seq reference data.
[1] Retain the overlapped genes in dec_celltype()
obj <- dec_celltype(obj, sc_data, sc_celltype, if_retain_other_genes = F) # default
[2] Retain all genes in the reference by setting if_retain_other_genes = T
obj <- dec_celltype(obj, sc_data, sc_celltype, if_retain_other_genes = T) # default
In this condition, the genes in reconstructed single-cell ST data are consistent with that in sc_data