Update process.py

YosefLab · Feb 1, 2023 · 24b2375 · 24b2375
1 parent d59957b
commit 24b2375
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/human_lung_cell_atlas/scripts/process.py b/human_lung_cell_atlas/scripts/process.py
@@ -14,6 +14,7 @@
 scvi.settings.reset_logging_handler()
 sys.stderr = open(snakemake.log[0], "w")  # noqa: F821
 sys.stdout = open(snakemake.log[1], "w")  # noqa: F821
+HF_TOKEN = snakemake.params["x"]
 
 tmpdir = tempfile.TemporaryDirectory()
 
@@ -109,6 +110,5 @@
 # create model
 hmo = HubModel(model_dir, metadata=hm, model_card=hmch)
 # push
-repo_token = "token" # TODO provide your token
-hmo.push_to_huggingface_hub(repo_name="scvi-tools/human-lung-cell-atlas", repo_token=repo_token, repo_create=True)
+hmo.push_to_huggingface_hub(repo_name="scvi-tools/human-lung-cell-atlas", repo_token=HF_TOKEN, repo_create=True)