feat: remove unused code

Project.toml

@@ -16,7 +16,6 @@ DelimitedFiles = "8bb1440f-4735-579b-a4ab-409b98df4dab"
 Distributed = "8ba89e20-285c-5b6f-9357-94700520ee1b"
 FFTW = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341"
 FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549"
-Folds = "41a02a25-b8f0-4f67-bc48-60067656b558"
 Git = "d7ba0133-e1db-5d97-8f8c-041e4b3a1eb2"
 HDF5 = "f67ccb44-e63f-5c2f-98bd-6dc0ccc4ba2f"
 ImageAxes = "2803e5a7-5153-5ecf-9a86-9b4c37f5f5ac"
@@ -54,7 +53,6 @@ TiledIteration = "06e1c1a7-607b-532d-9fad-de7d9aa2abac"
 UpdateJulia = "770da0de-323d-4d28-9202-0e205c1e0aff"
 
 [compat]
-julia = "1.8"
 AxisArrays = "0.4.6"
 Clustering = "0.15.2"
 ColorTypes = "0.11.4"
@@ -64,7 +62,6 @@ DataFrames = "1.5.0"
 DataStructures = "0.18.13"
 FFTW = "1.6.0"
 FileIO = "1.16.1"
-Folds = "0.2.8"
 Git = "1.3.0"
 HDF5 = "0.16.14"
 ImageAxes = "0.6.10"
@@ -93,6 +90,7 @@ StaticArrays = "1.5.25"
 StatsBase = "0.33.21"
 TiledIteration = "0.3.1"
 UpdateJulia = "0.4.2"
+julia = "1.8"
 
 [extras]
 Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"

src/IceFloeTracker.jl

@@ -15,7 +15,6 @@ using DSP
 using StaticArrays
 using OffsetArrays: centered
 using Serialization: serialize, deserialize
-using Folds
 
 export readdlm,
     padnhood,

src/tracker/matchcorr.jl

@@ -85,24 +85,3 @@ function corr(p1::T, p2::T) where {T<:AbstractArray}
     cc, _ = maximum.(IceFloeTracker.crosscorr(p1, p2; normalize=true))
     return cc
 end
-
-function matchcorr_simple(
-    f1::T, f2::T, psi::F=0.95, size::S=16, comp::F=0.25
-) where {T<:AbstractArray{Bool,2},S<:Int64,F<:Float64}
-
-    # check if the floes are too small and size are comparable
-    sz = size.([f1, f2])
-    if (any([(sz...)...] .< size) || getsizecomparability(sz...) > comp)
-        @warn "Floes are too small or their sizes are not comparable"
-        return NaN
-    end
-
-    _psi = buildψs.([f1, f2])
-    c = corr(_psi...)
-
-    if c < psi
-        @warn "correlation too low, c: $c"
-        return NaN
-    end
-    return c
-end

src/tracker/tracker-funcs.jl

@@ -160,43 +160,6 @@ function mean(x::T, y::T)::Float64 where {T<:Real}
     return (x + y) / 2
 end
 
-"""
-    propmatrix2df(propmatrix)
-
-Convert floe properties matrix `propmatrix` to a dataframe-like struct with fields `area`, `major_axis_length`, `minor_axis_length`, `convex_area`, `x_coord`, `y_coord` for the tacker step. Used for development purposes. TODO: remove this function when development is complete.
-"""
-function propmatrix2df(propmatrix)
-    # convert props_day1 to dataframe with column names area, majoraxis, minoraxis, convex_area, coords
-    return DataFrame(
-        propmatrix,
-        [
-            :area,
-            :perimeter,
-            :major_axis_length,
-            :minor_axis_length,
-            :orientation,
-            :row_centroid,
-            :col_centroid,
-            :convex_area,
-            :solidity,
-            :left,
-            :top,
-            :width,
-            :height,
-        ],
-    )
-    # Props((col for col in eachcol(propmatrix[:, [1, 3, 4, 8, 6, 7]]))...)
-end
-
-"""
-    poprow!(df::DataFrame, idx::Int64)
-
-"""
-function poprow!(df::DataFrame, idx::Int64)
-    deleteat!(df, idx)
-    return nothing
-end
-
 """
     makeemptydffrom(df::DataFrame)
 
@@ -395,19 +358,6 @@ function getpropsday1day2(properties, dayidx::Int64)
     return copy(properties[dayidx]), copy(properties[dayidx + 1])
 end
 
-"""
-    addmorematches!(matchingfloes, props_day, numtodadd=5)
-
-Add `numtodadd` more matches to `matchingfloes` using the floes in `props_day`.
-"""
-function addmorematches!(matchingfloes, props_day, numtodadd=5)
-    for j in 1:numtodadd
-        s = rand(1:4)
-        appendrow!(matchingfloes, props_day[s, :], randratios(), s)
-    end
-    return nothing
-end
-
 """
     getbestmatchdata(idx, r, props_day1, matching_floes)
 
@@ -506,18 +456,6 @@ end
 
 isnotnan(x) = !isnan(x)
 
-# generate random ratio data
-function randratios()
-    return (
-        area=rand(),
-        majoraxis=rand(),
-        minoraxis=rand(),
-        convex_area=rand(),
-        area_under=rand(),
-        corr=rand(),
-    )
-end
-
 # match_corr related functions
 
 """
@@ -530,13 +468,6 @@ function corr(p1, p2)
     return cc
 end
 
-"""
-    myargmax(mms)
-
-Return the index of the maximum value in `mms` and the maximum value.
-"""
-myargmax(mms) = (max=maximum(mms), idx=argmax(mms) + 1)
-
 """
    normalizeangle(revised,t=180)