Merge pull request #422 from WilhelmusLab/bump-scikit-image-ver

Update Py deps management

.github/workflows/CI.yml

@@ -25,11 +25,11 @@ jobs:
       - uses: actions/checkout@v4
       - uses: actions/setup-python@v5
         with:
-          python-version: '3.10'
+          python-version: '3.11'
       - name: update pip
         run: python -m pip install -U pip
       - name: install python deps
-        run: python -m pip install -U numpy==1.23 scikit-image==0.20.0 pyproj==3.6.0 rasterio==1.3.7 requests==2.31.0 skyfield==1.45.0 pandas==2 jinja2==3.1
+        run: python -m pip install -U -r requirements.txt
       - uses: julia-actions/setup-julia@v2
         with:
           version: ${{ matrix.version }}

requirements.txt

@@ -0,0 +1,8 @@
+jinja2==3.1
+numpy==1.23.2
+pandas==2.1
+pyproj==3.6.0
+rasterio==1.3.7
+scikit-image==0.20.0
+requests==2.31.0
+skyfield==1.45.0

src/IceFloeTracker.jl

@@ -77,14 +77,31 @@ end
 
 const IFTVERSION = get_version_from_toml()
 
+function parse_requirements(file_path)
+    requirements = Dict{String, String}()
+    open(file_path, "r") do f
+        for line in eachline(f)
+            pkg, version = split(line, "==")
+            requirements[pkg] = version
+        end
+    end
+    return requirements
+end
+
 function __init__()
-    pyimport_conda("numpy", "numpy=1.23")
-    pyimport_conda("pyproj", "pyproj=3.6.0")
-    pyimport_conda("rasterio", "rasterio=1.3.7")
-    pyimport_conda("jinja2", "jinja2=3.1.2")
-    pyimport_conda("pandas", "pandas=2")
+
+    deps = parse_requirements(joinpath(dirname(@__DIR__), "requirements.txt"))
+
+    for (pkg, version) in deps
+        if pkg == "scikit-image"
+            sk_measure_module = pyimport_conda("skimage.measure", "$(pkg)=$(version)")
+            copy!(sk_measure, sk_measure_module)
+        else
+            pyimport_conda(pkg, "$(pkg)=$(version)")
+        end
+    end
+
     @pyinclude(joinpath(@__DIR__, "latlon.py"))
-    copy!(sk_measure, pyimport_conda("skimage.measure", "scikit-image=0.20.0"))
     copy!(getlatlon, py"getlatlon")
     return nothing
 end