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@gwaybio gwaybio commented Feb 11, 2024

main_figure_5_jump_application

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@gwaybio gwaybio requested a review from jenna-tomkinson March 7, 2024 15:53
@gwaybio gwaybio marked this pull request as ready for review March 7, 2024 15:53
@gwaybio gwaybio changed the title [WIP] Add JUMP analysis figure Add JUMP analysis figure Mar 7, 2024
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LGTM! I made some small comments for you to address, but feel free to merge after 😄

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Clean and simple figure! Only nit-pick comment is that panel A has a bit more whitespace than panel B, especially on the left side. Might consider trying to reduce the whitespace more if possible.

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will do!

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Some comments:

  1. What is the difference between panels B and C? Is it that the B is the final model and C is shuffled? I can see they both focus only on compound perturbation which makes since as other perturbations did not show much enrichment at all.
  2. The y-axis titles are very close to the panel letters. Maybe it would work if the top plot for each panel could be moved in alignment with panel A, which might help with the whitespace.

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This is great feedback!

B and C have to do with time points. I add a ggtitle() to make this more clear.

I've updated the y axis titles and have moved panel A alignment closer to the label.

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gwaybio commented Mar 8, 2024

Updated figure 5

main_figure_5_jump_application

Updated sup fig

Uploading supplementary_jump_enrichment_shuffled_and_extended.png…

@gwaybio gwaybio merged commit 18488dd into WayScience:main Mar 8, 2024
@gwaybio gwaybio deleted the jump-umap-figure branch March 8, 2024 13:03
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2 participants