Skip to content

Conversation

@dependabot
Copy link
Contributor

@dependabot dependabot bot commented on behalf of github Feb 9, 2026

Bumps the uv group with 5 updates:

Package From To
lancedb 0.27.1 0.29.2
ome-arrow 0.0.5 0.0.6
ome-zarr 0.12.2 0.13.0
poethepoet 0.40.0 0.41.0
tifffile 2025.10.16 2026.1.28

Updates lancedb from 0.27.1 to 0.29.2

Release notes

Sourced from lancedb's releases.

Python LanceDB v0.29.2

🐛 Bug Fixes

🔧 Build and CI

Python LanceDB v0.29.1

Other Changes

🔧 Build and CI

Python LanceDB v0.29.0

🎉 New Features

🐛 Bug Fixes

📚 Documentation

Other Changes

... (truncated)

Commits
  • 027d535 Bump version: 0.29.2-beta.0 → 0.29.2
  • 9098f47 Bump version: 0.29.1 → 0.29.2-beta.0
  • 826a3e5 ci(nodejs): add repository field to package.json for npm provenance (#3003)
  • 9fac562 Bump version: 0.26.1-beta.0 → 0.26.1
  • c55ca20 Bump version: 0.26.0 → 0.26.1-beta.0
  • 5cdb15f Bump version: 0.29.1-beta.0 → 0.29.1
  • 7a3eea9 Bump version: 0.29.0 → 0.29.1-beta.0
  • 5dd9b07 ci: upgrade node version for publishing (#2993)
  • 6dde379 refactor: extract schema evolution logic from table.rs into submodule (#2973)
  • 55f09ef Bump version: 0.26.0-beta.0 → 0.26.0
  • Additional commits viewable in compare view

Updates ome-arrow from 0.0.5 to 0.0.6

Release notes

Sourced from ome-arrow's releases.

v0.0.6

Changes

Commits

Updates ome-zarr from 0.12.2 to 0.13.0

Release notes

Sourced from ome-zarr's releases.

v0.13.0

What's Changed

New Contributors

Full Changelog: ome/ome-zarr-py@v0.12.2...v0.13.0

Commits
  • 585daee Merge pull request #523 from jo-mueller/release-dask-versions
  • 60c722c Merge pull request #497 from ome/pre-commit-ci-update-config
  • b3e5eca Merge branch 'master' into pre-commit-ci-update-config
  • 27c08fa Merge pull request #496 from will-moore/scaler_preserve_dtype
  • 6f906d7 release dask version requirements
  • fd57701 Merge pull request #504 from Nirkan/feature/expose-version
  • 3a82d38 Merge pull request #503 from DimitriPapadopoulos/UP038
  • 0e3406c Merge pull request #520 from will-moore/pin_dask_2026.1.1
  • c6f031c Pin dask to 2026.1.1, fixes #518
  • d550b87 Merge pull request #476 from will-moore/parse_url_deprecation
  • Additional commits viewable in compare view

Updates poethepoet from 0.40.0 to 0.41.0

Release notes

Sourced from poethepoet's releases.

0.41.0

Enhancements

Full Changelog: nat-n/poethepoet@v0.40.0...v0.41.0

[!IMPORTANT] You must follow the instructions to (re)install the completion script for your preferred shell environment to benefit from the revamped tab completion covering task arguments.

Commits

Updates tifffile from 2025.10.16 to 2026.1.28

Release notes

Sourced from tifffile's releases.

v2026.1.28

Read and write TIFF files

Tifffile is a Python library to

  1. store NumPy arrays in TIFF (Tagged Image File Format) files, and
  2. read image and metadata from TIFF-like files used in bioimaging.

Image and metadata can be read from TIFF, BigTIFF, OME-TIFF, GeoTIFF, Adobe DNG, ZIF (Zoomable Image File Format), MetaMorph STK, Zeiss LSM, ImageJ hyperstack, Micro-Manager MMStack and NDTiff, SGI, NIHImage, Olympus FluoView and SIS, ScanImage, Molecular Dynamics GEL, Aperio SVS, Leica SCN, Roche BIF, PerkinElmer QPTIFF (QPI, PKI), Hamamatsu NDPI, Argos AVS, Philips DP, and ThermoFisher EER formatted files.

Image data can be read as NumPy arrays or Zarr arrays/groups from strips, tiles, pages (IFDs), SubIFDs, higher order series, and pyramidal levels.

Image data can be written to TIFF, BigTIFF, OME-TIFF, and ImageJ hyperstack compatible files in multi-page, volumetric, pyramidal, memory-mappable, tiled, predicted, or compressed form.

Many compression and predictor schemes are supported via the imagecodecs library, including LZW, PackBits, Deflate, PIXTIFF, LZMA, LERC, Zstd, JPEG (8 and 12-bit, lossless), JPEG 2000, JPEG XR, JPEG XL, WebP, PNG, EER, Jetraw, 24-bit floating-point, and horizontal differencing.

Tifffile can also be used to inspect TIFF structures, read image data from multi-dimensional file sequences, write fsspec ReferenceFileSystem for TIFF files and image file sequences, patch TIFF tag values, and parse many proprietary metadata formats.

Changes

  • Deprecate colormaped parameter in imagej_description (use colormapped).
  • Fix code review issues.

v2026.1.14

Read and write TIFF files

Tifffile is a Python library to

  1. store NumPy arrays in TIFF (Tagged Image File Format) files, and
  2. read image and metadata from TIFF-like files used in bioimaging.

Image and metadata can be read from TIFF, BigTIFF, OME-TIFF, GeoTIFF, Adobe DNG, ZIF (Zoomable Image File Format), MetaMorph STK, Zeiss LSM, ImageJ hyperstack, Micro-Manager MMStack and NDTiff, SGI, NIHImage, Olympus FluoView and SIS, ScanImage, Molecular Dynamics GEL, Aperio SVS, Leica SCN, Roche BIF, PerkinElmer QPTIFF (QPI, PKI), Hamamatsu NDPI, Argos AVS, Philips DP, and ThermoFisher EER formatted files.

Image data can be read as NumPy arrays or Zarr arrays/groups from strips, tiles, pages (IFDs), SubIFDs, higher order series, and pyramidal levels.

Image data can be written to TIFF, BigTIFF, OME-TIFF, and ImageJ hyperstack compatible files in multi-page, volumetric, pyramidal, memory-mappable, tiled, predicted, or compressed form.

Many compression and predictor schemes are supported via the imagecodecs library, including LZW, PackBits, Deflate, PIXTIFF, LZMA, LERC, Zstd, JPEG (8 and 12-bit, lossless), JPEG 2000, JPEG XR, JPEG XL, WebP, PNG, EER, Jetraw, 24-bit floating-point, and horizontal differencing.

Tifffile can also be used to inspect TIFF structures, read image data from multi-dimensional file sequences, write fsspec ReferenceFileSystem for TIFF files and image file sequences, patch TIFF tag values, and parse many proprietary metadata formats.

Changes

  • Improve code quality.

v2025.12.20

Read and write TIFF files

Tifffile is a Python library to

... (truncated)

Changelog

Sourced from tifffile's changelog.

2026.1.28

  • Pass 5128 tests.
  • Deprecate colormaped parameter in imagej_description (use colormapped).
  • Fix code review issues.

2026.1.14

  • Improve code quality.

2025.12.20

  • Do not initialize output arrays.

2025.12.12

  • Improve code quality.
Commits

Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting @dependabot rebase.


Dependabot commands and options

You can trigger Dependabot actions by commenting on this PR:

  • @dependabot rebase will rebase this PR
  • @dependabot recreate will recreate this PR, overwriting any edits that have been made to it
  • @dependabot show <dependency name> ignore conditions will show all of the ignore conditions of the specified dependency
  • @dependabot ignore <dependency name> major version will close this group update PR and stop Dependabot creating any more for the specific dependency's major version (unless you unignore this specific dependency's major version or upgrade to it yourself)
  • @dependabot ignore <dependency name> minor version will close this group update PR and stop Dependabot creating any more for the specific dependency's minor version (unless you unignore this specific dependency's minor version or upgrade to it yourself)
  • @dependabot ignore <dependency name> will close this group update PR and stop Dependabot creating any more for the specific dependency (unless you unignore this specific dependency or upgrade to it yourself)
  • @dependabot unignore <dependency name> will remove all of the ignore conditions of the specified dependency
  • @dependabot unignore <dependency name> <ignore condition> will remove the ignore condition of the specified dependency and ignore conditions

Bumps the uv group with 5 updates:

| Package | From | To |
| --- | --- | --- |
| [lancedb](https://github.com/lancedb/lancedb) | `0.27.1` | `0.29.2` |
| [ome-arrow](https://github.com/wayscience/ome-arrow) | `0.0.5` | `0.0.6` |
| [ome-zarr](https://github.com/ome/ome-zarr-py) | `0.12.2` | `0.13.0` |
| [poethepoet](https://github.com/nat-n/poethepoet) | `0.40.0` | `0.41.0` |
| [tifffile](https://github.com/cgohlke/tifffile) | `2025.10.16` | `2026.1.28` |


Updates `lancedb` from 0.27.1 to 0.29.2
- [Release notes](https://github.com/lancedb/lancedb/releases)
- [Changelog](https://github.com/lancedb/lancedb/blob/main/release_process.md)
- [Commits](lancedb/lancedb@python-v0.27.1...python-v0.29.2)

Updates `ome-arrow` from 0.0.5 to 0.0.6
- [Release notes](https://github.com/wayscience/ome-arrow/releases)
- [Commits](WayScience/ome-arrow@v0.0.5...v0.0.6)

Updates `ome-zarr` from 0.12.2 to 0.13.0
- [Release notes](https://github.com/ome/ome-zarr-py/releases)
- [Changelog](https://github.com/ome/ome-zarr-py/blob/master/CHANGELOG.md)
- [Commits](ome/ome-zarr-py@v0.12.2...v0.13.0)

Updates `poethepoet` from 0.40.0 to 0.41.0
- [Release notes](https://github.com/nat-n/poethepoet/releases)
- [Commits](nat-n/poethepoet@v0.40.0...v0.41.0)

Updates `tifffile` from 2025.10.16 to 2026.1.28
- [Release notes](https://github.com/cgohlke/tifffile/releases)
- [Changelog](https://github.com/cgohlke/tifffile/blob/master/CHANGES.rst)
- [Commits](cgohlke/tifffile@v2025.10.16...v2026.1.28)

---
updated-dependencies:
- dependency-name: lancedb
  dependency-version: 0.29.2
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: uv
- dependency-name: ome-arrow
  dependency-version: 0.0.6
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: uv
- dependency-name: ome-zarr
  dependency-version: 0.13.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: uv
- dependency-name: poethepoet
  dependency-version: 0.41.0
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: uv
- dependency-name: tifffile
  dependency-version: 2026.1.28
  dependency-type: direct:production
  update-type: version-update:semver-major
  dependency-group: uv
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot bot added dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code labels Feb 9, 2026
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code

Projects

None yet

Development

Successfully merging this pull request may close these issues.

0 participants