IGV: new package (spack#6710)

var/spack/repos/builtin/packages/igv/package.py

@@ -0,0 +1,54 @@
+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+import glob
+
+
+class Igv(Package):
+    """The Integrative Genomics Viewer (IGV) is a high-performance
+       visualization tool for interactive exploration of large,
+       integrated genomic datasets."""
+
+    homepage = "http://software.broadinstitute.org/software/igv/"
+
+    version('2.4.5', '4c45e1b281d8e3d8630aa485c5df6949',
+        url='http://data.broadinstitute.org/igv/projects/downloads/2.4/IGVSource_2.4.5.zip')
+    version('2.3.50', '7fdb903a59d556fad25e668b38e860f8',
+        url='http://data.broadinstitute.org/igv/projects/downloads/2.3/IGVSource_2.3.50.zip')
+
+    depends_on('jdk@8:', type=('build', 'run'), when='@2.4:')
+    depends_on('jdk@7u0:7u999', type=('build', 'run'), when='@2.3:2.3.999')
+    depends_on('ant', type='build')
+
+    def install(self, spec, prefix):
+        ant = self.spec['ant'].command
+        ant('all')
+        mkdirp(prefix.bin)
+        install('igv.sh', prefix.bin)
+        install('igv.jar', prefix.bin)
+        mkdirp(prefix.lib)
+        files = [x for x in glob.glob("lib/*jar")]
+        for f in files:
+            install(f, prefix.lib)