My name is Vincent Talen and I am currently studying the Bachelor Bioinformatics at the Hanze University of Applied Sciences in the Netherlands!
chopper, minimap2, samtools, bamtools, bcftools, featureCounts, medaka, FastQC, Bowtie 2, bwa
Bioconductor, Biopython, Bioconda, Galaxy, Weka, GNU Parallel, MPI (MPI4Py), Slurm, PySpark, Snakemake
BLAST, Fasta, Clustal, GenBank, PDB, EMBL, Pfam, KEGG, Interpro
- Project Gene Expression Analysis: (BIN Year 2 - Period 7)
- Performing an Exploratory Data Analysis and finding Differentially Expressed Genes
- Project Systems Biology: (BIN Year 2 - Period 8)
- Simulating a biological system using R and the package DeSolve
- Project Research Web Applications (Private): (BIN Year 3 - Period 10)
- Creating a web application for laboratory equipment booking using Java, Gradle, Tomcat and Thymeleaf
- Advanced Datamining: (BIN Year 3 - Period 11)
- Programming my own neural network module in Python
- Big Data Computing: (BIN Year 3 - Period 12)
- High-performance Computing using Python Multiprocessing, MPI4Py, Slurm and PySpark
- Minor Project (Private): (BIN Year 3 - Minor)
- Improving and adapting a Snakemake pipeline to support dynamic pathogen typing