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Added --cpu to README [no ci]
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andreped authored Sep 22, 2023
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Expand Up @@ -40,11 +40,11 @@ lungtumormask input_file output_file
lungtumormask patient_01.nii.gz mask_01.nii.gz
# Custom arguments
lungtumormask patient_01.nii.gz mask_01.nii.gz --lung-filter --threshold 0.3 --radius 3 --batch-size 8
lungtumormask patient_01.nii.gz mask_01.nii.gz --lung-filter --threshold 0.3 --radius 3 --batch-size 8 --cpu
```

In the last example, we filter tumor candidates outside the lungs, use a lower probability threshold to boost recall, and use a morphological smoothing step
to fill holes inside segmentations using a disk kernel of radius 3.
In the last example, we filter tumor candidates outside the lungs, use a lower probability threshold to boost recall, use a morphological smoothing step
to fill holes inside segmentations using a disk kernel of radius 3, and `--cpu` to disable the GPU during computation.

## [Applications](https://github.com/VemundFredriksen/LungTumorMask#applications)
* The software has been successfully integrated into the open platform [Fraxinus](https://github.com/SINTEFMedtek/Fraxinus).
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