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@VCCRI

Victor Chang Cardiac Research Institute

The Victor Chang Cardiac Research Institute is dedicated to fighting cardiovascular disease through research.

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  1. CIDR CIDR Public

    Clustering through Imputation and Dimensionality Reduction

    R 63 22

  2. Sierra Sierra Public

    Discover differential transcript usage from polyA-captured single cell RNA-seq data

    R 53 19

  3. Falco Falco Public

    A quick and flexible single-cell RNA-seq processing framework on the cloud

    Python 39 10

  4. SVPV SVPV Public

    Structural Variant Prediction Viewer

    Python 35 10

  5. VPOT VPOT Public

    VPOT - Variant Prioritisation Ordering Tool. VPOT is a Python tool written to allow prioritisation of variants in ANNOVAR annotated VCF files.

    Python 19 4

  6. Ularcirc Ularcirc Public

    An R-shiny app that provides backsplice and canonical splicing analysis for both circular RNA (circRNA) and parental transcripts

    R 18 8

Repositories

Showing 10 of 65 repositories
  • NDD_multiomic_study_2025 Public

    A 2025 study investigating the link between NDD and CHD using multi-omic methods

    VCCRI/NDD_multiomic_study_2025’s past year of commit activity
    R 0 CC0-1.0 0 0 0 Updated Nov 10, 2025
  • Spliceogen Public
    VCCRI/Spliceogen’s past year of commit activity
    Java 4 2 0 0 Updated Nov 5, 2025
  • ShinyCell Public Forked from SGDDNB/ShinyCell

    Shiny Interactive Web Apps for Single-Cell Data

    VCCRI/ShinyCell’s past year of commit activity
    R 0 GPL-3.0 64 0 1 Updated Oct 27, 2025
  • LAMA Public Forked from mpi2/LAMA

    Automatic phenotyping tool for 3D images

    VCCRI/LAMA’s past year of commit activity
    Python 0 6 0 0 Updated Sep 1, 2025
  • Ularcirc Public

    An R-shiny app that provides backsplice and canonical splicing analysis for both circular RNA (circRNA) and parental transcripts

    VCCRI/Ularcirc’s past year of commit activity
    R 18 GPL-3.0 8 7 0 Updated Aug 14, 2025
  • ShinyCell2 Public Forked from the-ouyang-lab/ShinyCell2

    ShinyCell2 is a lightweight R package for building interactive, shareable apps to explore single-cell multi-omics, scATAC-seq and spatial transcriptomics data with customizable, publication-ready visualizations.

    VCCRI/ShinyCell2’s past year of commit activity
    R 0 GPL-3.0 9 0 0 Updated Jun 13, 2025
  • VSCode-DevContainer-dockerfile Public

    Initiate a VS Code dev container from a dockerfile

    VCCRI/VSCode-DevContainer-dockerfile’s past year of commit activity
    Dockerfile 0 0 0 0 Updated May 13, 2025
  • KICA Public

    KICA: A MATLAB package for high-throughput analysis of calcium and voltage imaging data from cardiac cells

    VCCRI/KICA’s past year of commit activity
    MATLAB 1 0 0 0 Updated May 5, 2025
  • variant_calling_and_annotation_pipeline Public

    Scripts to call, annotate and analyse variants for multiple samples of whole genome sequencing (WGS)

    VCCRI/variant_calling_and_annotation_pipeline’s past year of commit activity
    Shell 0 GPL-3.0 1 0 0 Updated May 5, 2025
  • VCCRI/AZ-container-apps-practice’s past year of commit activity
    Python 0 0 0 1 Updated Mar 22, 2025

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