adding an integration test to show fetch_content can work #1153
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| ### | |
| # Build hdf5 dependencies and cache them in a combined directory. | |
| ### | |
| name: Run Ubuntu/Linux netCDF Tests | |
| on: [pull_request, workflow_dispatch] | |
| concurrency: | |
| group: ${{ github.workflow}}-${{ github.head_ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| build-deps-serial: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| hdf5: [ 1.10.8, 1.12.2, 1.14.3 ] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install System dependencies | |
| shell: bash -l {0} | |
| run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev doxygen openssl | |
| ### | |
| # Installing libhdf5 | |
| ### | |
| - name: Cache libhdf5-${{ matrix.hdf5 }} | |
| id: cache-hdf5 | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/environments/${{ matrix.hdf5 }} | |
| key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }} | |
| - name: Build libhdf5-${{ matrix.hdf5 }} | |
| if: steps.cache-hdf5.outputs.cache-hit != 'true' | |
| run: | | |
| set -x | |
| wget https://support.hdfgroup.org/ftp/HDF/releases/HDF4.2.15/src/hdf-4.2.15.tar.bz2 | |
| tar -jxf hdf-4.2.15.tar.bz2 | |
| pushd hdf-4.2.15 | |
| ./configure --prefix=${HOME}/environments/${{ matrix.hdf5 }} --disable-static --enable-shared --disable-fortran --disable-netcdf --with-szlib --enable-hdf4-xdr | |
| make -j | |
| make install -j | |
| popd | |
| wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-$(echo ${{ matrix.hdf5 }} | cut -d. -f 1,2)/hdf5-${{ matrix.hdf5 }}/src/hdf5-${{ matrix.hdf5 }}.tar.bz2 | |
| tar -jxf hdf5-${{ matrix.hdf5 }}.tar.bz2 | |
| pushd hdf5-${{ matrix.hdf5 }} | |
| ./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }} --enable-hl --with-szlib | |
| make -j | |
| make install -j | |
| popd | |
| build-deps-parallel: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| hdf5: [ 1.14.3 ] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install System dependencies | |
| shell: bash -l {0} | |
| run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev mpich libmpich-dev | |
| ### | |
| # Installing libhdf5 | |
| ### | |
| - name: Cache libhdf5-parallel-${{ matrix.hdf5 }} | |
| id: cache-hdf5 | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/environments/${{ matrix.hdf5 }} | |
| key: hdf5-parallel-${{ runner.os }}-${{ matrix.hdf5 }} | |
| - name: Build libhdf5-${{ matrix.hdf5 }}-pnetcdf-1.12.3 | |
| if: steps.cache-hdf5.outputs.cache-hit != 'true' | |
| run: | | |
| set -x | |
| wget https://support.hdfgroup.org/ftp/HDF/releases/HDF4.2.15/src/hdf-4.2.15.tar.bz2 | |
| tar -jxf hdf-4.2.15.tar.bz2 | |
| pushd hdf-4.2.15 | |
| CC=mpicc ./configure --prefix=${HOME}/environments/${{ matrix.hdf5 }} --disable-static --enable-shared --disable-fortran --disable-netcdf --with-szlib --enable-parallel --enable-hdf4-xdr | |
| make -j | |
| make install -j | |
| popd | |
| wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-$(echo ${{ matrix.hdf5 }} | cut -d. -f 1,2)/hdf5-${{ matrix.hdf5 }}/src/hdf5-${{ matrix.hdf5 }}.tar.bz2 | |
| tar -jxf hdf5-${{ matrix.hdf5 }}.tar.bz2 | |
| pushd hdf5-${{ matrix.hdf5 }} | |
| CC=mpicc ./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }} --enable-hl --with-szlib --enable-parallel | |
| make -j | |
| make install -j | |
| popd | |
| wget https://parallel-netcdf.github.io/Release/pnetcdf-1.12.3.tar.gz | |
| tar -zxf pnetcdf-1.12.3.tar.gz | |
| pushd pnetcdf-1.12.3 | |
| CC=mpicc ./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }} | |
| make -j | |
| make install -j | |
| popd | |
| ##### | |
| # One-Off Autotools-based tests. | |
| ##### | |
| ## | |
| # Serial, Shared | |
| ## | |
| nc-ac-tests-oneoff-serial-shared: | |
| needs: build-deps-serial | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| hdf5: [ 1.14.3 ] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install System dependencies | |
| shell: bash -l {0} | |
| run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev doxygen valgrind | |
| ### | |
| # Set Environmental Variables | |
| ### | |
| - run: echo "CFLAGS=-I${HOME}/environments/${{ matrix.hdf5 }}/include" >> $GITHUB_ENV | |
| - run: echo "LDFLAGS=-L${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV | |
| - run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV | |
| ### | |
| # Fetch Cache | |
| ### | |
| - name: Fetch HDF Cache | |
| id: cache-hdf | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/environments/${{ matrix.hdf5 }} | |
| key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }} | |
| - name: Check Cache | |
| shell: bash -l {0} | |
| run: ls ${HOME}/environments && ls ${HOME}/environments/${{ matrix.hdf5 }} && ls ${HOME}/environments/${{ matrix.hdf5}}/lib | |
| ### | |
| # Configure and build | |
| ### | |
| - name: Run autoconf | |
| shell: bash -l {0} | |
| run: autoreconf -if | |
| - name: Configure | |
| shell: bash -l {0} | |
| run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ./configure --enable-hdf5 --enable-dap --disable-dap-remote-tests --enable-doxygen --enable-external-server-tests --disable-xml2 | |
| if: ${{ success() }} | |
| - name: Look at config.log if error | |
| shell: bash -l {0} | |
| run: cat config.log | |
| if: ${{ failure() }} | |
| - name: Print Summary | |
| shell: bash -l {0} | |
| run: cat libnetcdf.settings | |
| - name: Build Library and Utilities | |
| shell: bash -l {0} | |
| run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make -j | |
| if: ${{ success() }} | |
| - name: Build Tests | |
| shell: bash -l {0} | |
| run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make check TESTS="" -j | |
| if: ${{ success() }} | |
| - name: Run Tests | |
| shell: bash -l {0} | |
| run: | | |
| LD_LIBRARY_PATH="/home/runner/work/netcdf-c/netcdf-c/liblib/.libs:${LD_LIBRARY_PATH}" | |
| CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make check -j | |
| if: ${{ success() }} | |
| - name: Create source distribution | |
| shell: bash -l {0} | |
| if: ${{ success() }} | |
| run: make dist -j | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| name: netcdf-c-autotools-source-distribution | |
| path: | | |
| *.tar* | |
| *.zip | |
| *.tgz | |
| ## | |
| # | |
| ## Serial, Static | |
| nc-ac-tests-oneoff-serial-static: | |
| needs: build-deps-serial | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| hdf5: [ 1.14.3 ] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install System dependencies | |
| shell: bash -l {0} | |
| run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev doxygen valgrind | |
| ### | |
| # Set Environmental Variables | |
| ### | |
| - run: echo "CFLAGS=-I${HOME}/environments/${{ matrix.hdf5 }}/include" >> $GITHUB_ENV | |
| - run: echo "LDFLAGS=-L${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV | |
| - run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV | |
| ### | |
| # Fetch Cache | |
| ### | |
| - name: Fetch HDF Cache | |
| id: cache-hdf | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/environments/${{ matrix.hdf5 }} | |
| key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }} | |
| - name: Check Cache | |
| shell: bash -l {0} | |
| run: ls ${HOME}/environments && ls ${HOME}/environments/${{ matrix.hdf5 }} && ls ${HOME}/environments/${{ matrix.hdf5}}/lib | |
| ### | |
| # Configure and build | |
| ### | |
| - name: Run autoconf | |
| shell: bash -l {0} | |
| run: autoreconf -if | |
| - name: Configure | |
| shell: bash -l {0} | |
| run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ./configure --enable-hdf5 --enable-dap --disable-dap-remote-tests --enable-doxygen --enable-external-server-tests --disable-xml2 --disable-shared --enable-static | |
| if: ${{ success() }} | |
| - name: Look at config.log if error | |
| shell: bash -l {0} | |
| run: cat config.log | |
| if: ${{ failure() }} | |
| - name: Print Summary | |
| shell: bash -l {0} | |
| run: cat libnetcdf.settings | |
| - name: Build Library and Utilities | |
| shell: bash -l {0} | |
| run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make -j | |
| if: ${{ success() }} | |
| - name: Build Tests | |
| shell: bash -l {0} | |
| run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make check TESTS="" -j | |
| if: ${{ success() }} | |
| - name: Run Tests | |
| shell: bash -l {0} | |
| run: | | |
| LD_LIBRARY_PATH="/home/runner/work/netcdf-c/netcdf-c/liblib/.libs:${LD_LIBRARY_PATH}" | |
| CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make check -j | |
| if: ${{ success() }} | |
| - name: Create source distribution | |
| shell: bash -l {0} | |
| if: ${{ success() }} | |
| run: make dist -j | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| name: netcdf-c-autotools-source-distribution | |
| path: | | |
| *.tar* | |
| *.zip | |
| *.tgz | |
| ## | |
| # Parallel | |
| ## | |
| nc-ac-tests-oneoff-parallel: | |
| needs: build-deps-parallel | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| hdf5: [ 1.14.3 ] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install System dependencies | |
| shell: bash -l {0} | |
| run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev mpich libmpich-dev | |
| ### | |
| # Set Environmental Variables | |
| ### | |
| - run: echo "CFLAGS=-I${HOME}/environments/${{ matrix.hdf5 }}/include" >> $GITHUB_ENV | |
| - run: echo "LDFLAGS=-L${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV | |
| - run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV | |
| - name: Fetch HDF Cache | |
| id: cache-hdf | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/environments/${{ matrix.hdf5 }} | |
| key: hdf5-parallel-${{ runner.os }}-${{ matrix.hdf5 }} | |
| - name: Check Cache | |
| shell: bash -l {0} | |
| run: ls ${HOME}/environments && ls ${HOME}/environments/${{ matrix.hdf5 }} && ls ${HOME}/environments/${{ matrix.hdf5}}/lib | |
| ### | |
| # Configure and build | |
| ### | |
| - name: Run autoconf | |
| shell: bash -l {0} | |
| run: autoreconf -if | |
| - name: Configure | |
| shell: bash -l {0} | |
| run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} CC=mpicc ./configure --enable-hdf5 --enable-dap --disable-dap-remote-tests --enable-parallel-tests --enable-pnetcdf | |
| if: ${{ success() }} | |
| - name: Look at config.log if error | |
| shell: bash -l {0} | |
| run: cat config.log | |
| if: ${{ failure() }} | |
| - name: Print Summary | |
| shell: bash -l {0} | |
| run: cat libnetcdf.settings | |
| - name: Build Library and Utilities | |
| shell: bash -l {0} | |
| run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} CC=mpicc make -j | |
| if: ${{ success() }} | |
| - name: Build Tests | |
| shell: bash -l {0} | |
| run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} CC=mpicc make check TESTS="" -j | |
| if: ${{ success() }} | |
| - name: Run Tests | |
| shell: bash -l {0} | |
| run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} CC=mpicc make check -j | |
| if: ${{ success() }} | |
| ##### | |
| # One-Off CMake-based tests. | |
| ##### | |
| ## | |
| # Serial, Shared | |
| ## | |
| nc-cmake-tests-oneoff-serial-shared: | |
| needs: build-deps-serial | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| hdf5: [ 1.14.3 ] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install System dependencies | |
| shell: bash -l {0} | |
| run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev doxygen | |
| ### | |
| # Set Environmental Variables | |
| ### | |
| - run: echo "CMAKE_PREFIX_PATH=${HOME}/environments/${{ matrix.hdf5 }}/" >> $GITHUB_ENV | |
| - run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV | |
| ### | |
| # Fetch Cache | |
| ### | |
| - name: Fetch HDF Cache | |
| id: cache-hdf5 | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/environments/${{ matrix.hdf5 }} | |
| key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }} | |
| - name: Check Cache | |
| shell: bash -l {0} | |
| run: ls ${HOME}/environments && ls ${HOME}/environments/${{ matrix.hdf5 }} && ls ${HOME}/environments/${{ matrix.hdf5}}/lib | |
| ### | |
| # Configure and build | |
| ### | |
| - name: Perform out-of-directory build | |
| shell: bash -l {0} | |
| run: | | |
| mkdir build | |
| cd build | |
| LD_LIBRARY_PATH=${LD_LIBRARY_PATH} cmake .. -DCMAKE_PREFIX_PATH=${CMAKE_PREFIX_PATH} -DENABLE_DAP=TRUE -DENABLE_HDF5=TRUE -DENABLE_NCZARR=TRUE -DENABLE_DAP_LONG_TESTS=TRUE -DENABLE_LIBXML2=FALSE | |
| - name: Print Summary | |
| shell: bash -l {0} | |
| run: | | |
| cd build | |
| cat libnetcdf.settings | |
| - name: Build All | |
| shell: bash -l {0} | |
| run: | | |
| cd build | |
| LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make -j 12 | |
| if: ${{ success() }} | |
| - name: Run Tests | |
| shell: bash -l {0} | |
| run: | | |
| cd build | |
| LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest --output-on-failure -j 12 . | |
| if: ${{ success() }} | |
| - name: Verbose Output if CTest Failure | |
| shell: bash -l {0} | |
| run: | | |
| cd build | |
| LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest -j 12 --rerun-failed --output-on-failure -VV | |
| if: ${{ failure() }} | |
| ## | |
| # Serial, Shared | |
| ## | |
| nc-cmake-tests-oneoff-serial-static: | |
| needs: build-deps-serial | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| hdf5: [ 1.14.3 ] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install System dependencies | |
| shell: bash -l {0} | |
| run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev doxygen | |
| ### | |
| # Set Environmental Variables | |
| ### | |
| - run: echo "CMAKE_PREFIX_PATH=${HOME}/environments/${{ matrix.hdf5 }}/" >> $GITHUB_ENV | |
| - run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV | |
| - run: echo "CMAKE_C_FLAGS=-fPIC" >> $GITHUB_ENV | |
| ### | |
| # Fetch Cache | |
| ### | |
| - name: Fetch HDF Cache | |
| id: cache-hdf5 | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/environments/${{ matrix.hdf5 }} | |
| key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }} | |
| - name: Check Cache | |
| shell: bash -l {0} | |
| run: ls ${HOME}/environments && ls ${HOME}/environments/${{ matrix.hdf5 }} && ls ${HOME}/environments/${{ matrix.hdf5}}/lib | |
| ### | |
| # Configure and build | |
| ### | |
| - name: Perform out-of-directory build | |
| shell: bash -l {0} | |
| run: | | |
| mkdir build | |
| cd build | |
| LD_LIBRARY_PATH=${LD_LIBRARY_PATH} cmake .. -DCMAKE_PREFIX_PATH=${CMAKE_PREFIX_PATH} -DENABLE_DAP=TRUE -DENABLE_HDF5=TRUE -DENABLE_NCZARR=TRUE -DENABLE_DAP_LONG_TESTS=TRUE -DENABLE_LIBXML2=FALSE -DBUILD_SHARED_LIBS=FALSE -DCMAKE_C_FLAGS=${CMAKE_C_FLAGS} | |
| - name: Print Summary | |
| shell: bash -l {0} | |
| run: | | |
| cd build | |
| cat libnetcdf.settings | |
| - name: Build All | |
| shell: bash -l {0} | |
| run: | | |
| cd build | |
| LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make -j 12 | |
| if: ${{ success() }} | |
| - name: Run Tests | |
| shell: bash -l {0} | |
| run: | | |
| cd build | |
| LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest --output-on-failure -j 12 . | |
| if: ${{ success() }} | |
| - name: Verbose Output if CTest Failure | |
| shell: bash -l {0} | |
| run: | | |
| cd build | |
| LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest -j 12 --rerun-failed --output-on-failure -VV | |
| if: ${{ failure() }} | |
| ## | |
| # Parallel | |
| ## | |
| nc-cmake-tests-oneoff-parallel: | |
| needs: build-deps-parallel | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| hdf5: [ 1.14.3 ] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install System dependencies | |
| shell: bash -l {0} | |
| run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev doxygen mpich libmpich-dev | |
| ### | |
| # Set Environmental Variables | |
| ### | |
| - run: echo "CMAKE_PREFIX_PATH=${HOME}/environments/${{ matrix.hdf5 }}/" >> $GITHUB_ENV | |
| - run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV | |
| ### | |
| # Fetch Cache | |
| ### | |
| - name: Fetch HDF Cache | |
| id: cache-hdf5 | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/environments/${{ matrix.hdf5 }} | |
| key: hdf5-parallel-${{ runner.os }}-${{ matrix.hdf5 }} | |
| - name: Check Cache | |
| shell: bash -l {0} | |
| run: ls ${HOME}/environments && ls ${HOME}/environments/${{ matrix.hdf5 }} && ls ${HOME}/environments/${{ matrix.hdf5}}/lib | |
| ### | |
| # Configure and build | |
| ### | |
| - name: Perform out-of-directory build | |
| shell: bash -l {0} | |
| run: | | |
| mkdir build | |
| cd build | |
| LD_LIBRARY_PATH=${LD_LIBRARY_PATH} cmake .. -DCMAKE_C_COMPILER=mpicc -DCMAKE_PREFIX_PATH=${CMAKE_PREFIX_PATH} -DENABLE_DAP=TRUE -DENABLE_HDF5=TRUE -DENABLE_NCZARR=TRUE -D ENABLE_DAP_LONG_TESTS=TRUE -DENABLE_PNETCDF=TRUE | |
| - name: Print Summary | |
| shell: bash -l {0} | |
| run: | | |
| cd build | |
| cat libnetcdf.settings | |
| - name: Build All | |
| shell: bash -l {0} | |
| run: | | |
| cd build | |
| LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make -j 12 | |
| if: ${{ success() }} | |
| - name: Run Tests | |
| shell: bash -l {0} | |
| run: | | |
| cd build | |
| LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest --output-on-failure -j 12 . | |
| if: ${{ success() }} | |
| - name: Verbose Output if CTest Failure | |
| shell: bash -l {0} | |
| run: | | |
| cd build | |
| LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest -j 12 --rerun-failed --output-on-failure -VV | |
| if: ${{ failure() }} | |
| nc-autotools: | |
| needs: [ nc-cmake-tests-oneoff-serial-shared, nc-cmake-tests-oneoff-serial-static, nc-ac-tests-oneoff-serial-shared, nc-ac-tests-oneoff-serial-static, nc-cmake-tests-oneoff-parallel, nc-ac-tests-oneoff-parallel ] | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| hdf5: [1.10.8, 1.12.2, 1.14.3 ] | |
| use_nc4: [ nc3, nc4 ] | |
| use_dap: [ dap_off, dap_on ] | |
| use_nczarr: [ nczarr_off, nczarr_on ] | |
| steps: | |
| - uses: actions/download-artifact@v3 | |
| with: | |
| name: netcdf-c-autotools-source-distribution | |
| - name: Unpack source distribution | |
| shell: bash -l {0} | |
| run: | | |
| if [ -f *.zip ]; | |
| then | |
| unzip *.zip | |
| else | |
| tar xvzf $(ls *.tar* *.tgz *.zip | head -1) | |
| fi | |
| ls -d netcdf-c* | |
| for name in netcdf-c*; | |
| do | |
| if [ -d ${name} ]; | |
| then | |
| cd ${name} | |
| break | |
| fi | |
| done | |
| - name: Install System dependencies | |
| shell: bash -l {0} | |
| run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev | |
| ### | |
| # Set Environmental Variables | |
| ### | |
| - run: echo "CFLAGS=-I${HOME}/environments/${{ matrix.hdf5 }}/include" >> $GITHUB_ENV | |
| - run: echo "LDFLAGS=-L${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV | |
| - run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV | |
| - run: | | |
| echo "ENABLE_HDF5=--disable-hdf5" >> $GITHUB_ENV | |
| if: matrix.use_nc4 == 'nc3' | |
| - run: | | |
| echo "ENABLE_HDF5=--enable-hdf5" >> $GITHUB_ENV | |
| if: matrix.use_nc4 == 'nc4' | |
| - run: echo "ENABLE_DAP=--disable-dap" >> $GITHUB_ENV | |
| if: matrix.use_dap == 'dap_off' | |
| - run: echo "ENABLE_DAP=--enable-dap" >> $GITHUB_ENV | |
| if: matrix.use_dap == 'dap_on' | |
| - run: echo "ENABLE_NCZARR=--disable-nczarr" >> $GITHUB_ENV | |
| if: matrix.use_nczarr == 'nczarr_off' | |
| - run: echo "ENABLE_NCZARR=--enable-nczarr" >> $GITHUB_ENV | |
| if: matrix.use_nczarr == 'nczarr_on' | |
| ### | |
| # Fetch Cache | |
| ### | |
| - name: Fetch HDF Cache | |
| id: cache-hdf | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/environments/${{ matrix.hdf5 }} | |
| key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }} | |
| - name: Check Cache | |
| shell: bash -l {0} | |
| run: ls ${HOME}/environments && ls ${HOME}/environments/${{ matrix.hdf5 }} && ls ${HOME}/environments/${{ matrix.hdf5}}/lib | |
| ### | |
| # Configure and build | |
| ### | |
| - name: Run autoconf | |
| shell: bash -l {0} | |
| run: | | |
| for name in netcdf-c*; | |
| do | |
| if [ -d ${name} ]; | |
| then | |
| cd ${name} | |
| break | |
| fi | |
| done | |
| autoreconf -if | |
| - name: Configure | |
| shell: bash -l {0} | |
| run: | | |
| for name in netcdf-c*; | |
| do | |
| if [ -d ${name} ]; | |
| then | |
| cd ${name} | |
| break | |
| fi | |
| done | |
| current_directory="$(pwd)" | |
| mkdir ../build | |
| cd ../build && CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} "${current_directory}/configure" ${ENABLE_HDF5} ${ENABLE_DAP} ${ENABLE_NCZARR} | |
| if: ${{ success() }} | |
| - name: Look at config.log if error | |
| shell: bash -l {0} | |
| run: | | |
| if [ -d ../build ]; | |
| then | |
| cd ../build | |
| else | |
| cd build | |
| fi && cat config.log | |
| if: ${{ failure() }} | |
| - name: Print Summary | |
| shell: bash -l {0} | |
| run: | | |
| if [ -d ../build ]; | |
| then | |
| cd ../build | |
| else | |
| cd build | |
| fi && cat libnetcdf.settings | |
| - name: Build Library and Utilities | |
| shell: bash -l {0} | |
| run: | | |
| if [ -d ../build ]; | |
| then | |
| cd ../build | |
| else | |
| cd build | |
| fi && CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make -j | |
| if: ${{ success() }} | |
| - name: Build Tests | |
| shell: bash -l {0} | |
| run: | | |
| if [ -d ../build ]; | |
| then | |
| cd ../build | |
| else | |
| cd build | |
| fi && CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make check TESTS="" -j | |
| if: ${{ success() }} | |
| - name: Run Tests | |
| shell: bash -l {0} | |
| run: | | |
| if [ -d ../build ]; | |
| then | |
| cd ../build | |
| else | |
| cd build | |
| fi && CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make check -j | |
| if: ${{ success() }} | |
| nc-cmake: | |
| needs: [ nc-cmake-tests-oneoff-serial-shared, nc-cmake-tests-oneoff-serial-static, nc-ac-tests-oneoff-serial-shared, nc-ac-tests-oneoff-serial-static, nc-cmake-tests-oneoff-parallel, nc-ac-tests-oneoff-parallel ] | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| hdf5: [ 1.10.8, 1.12.2, 1.14.3 ] | |
| use_nc4: [ nc3, nc4 ] | |
| use_dap: [ dap_off, dap_on ] | |
| use_nczarr: [ nczarr_off, nczarr_on ] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install System dependencies | |
| shell: bash -l {0} | |
| run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev | |
| ### | |
| # Set Environmental Variables | |
| ### | |
| - run: echo "CMAKE_PREFIX_PATH=${HOME}/environments/${{ matrix.hdf5 }}/" >> $GITHUB_ENV | |
| - run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV | |
| - run: | | |
| echo "ENABLE_HDF5=OFF" >> $GITHUB_ENV | |
| if: matrix.use_nc4 == 'nc3' | |
| - run: | | |
| echo "ENABLE_HDF5=ON" >> $GITHUB_ENV | |
| if: matrix.use_nc4 == 'nc4' | |
| - run: echo "ENABLE_DAP=OFF" >> $GITHUB_ENV | |
| if: matrix.use_dap == 'dap_off' | |
| - run: echo "ENABLE_DAP=ON" >> $GITHUB_ENV | |
| if: matrix.use_dap == 'dap_on' | |
| - run: echo "ENABLE_NCZARR=OFF" >> $GITHUB_ENV | |
| if: matrix.use_nczarr == 'nczarr_off' | |
| - run: echo "ENABLE_NCZARR=ON" >> $GITHUB_ENV | |
| if: matrix.use_nczarr == 'nczarr_on' | |
| - run: echo "CTEST_OUTPUT_ON_FAILURE=1" >> $GITHUB_ENV | |
| ### | |
| # Fetch Cache | |
| ### | |
| - name: Fetch HDF Cache | |
| id: cache-hdf5 | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/environments/${{ matrix.hdf5 }} | |
| key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }} | |
| - name: Check Cache | |
| shell: bash -l {0} | |
| run: ls ${HOME}/environments/${{ matrix.hdf5 }} && ls ${HOME}/environments/${{ matrix.hdf5}}/lib | |
| ### | |
| # Configure and build | |
| ### | |
| - name: Perform out-of-directory build | |
| shell: bash -l {0} | |
| run: | | |
| mkdir build | |
| cd build | |
| LD_LIBRARY_PATH=${LD_LIBRARY_PATH} cmake .. -DCMAKE_PREFIX_PATH=${CMAKE_PREFIX_PATH} -DENABLE_DAP=${ENABLE_DAP} -DENABLE_HDF5=${ENABLE_HDF5} -DENABLE_NCZARR=${ENABLE_NCZARR} | |
| - name: Print Summary | |
| shell: bash -l {0} | |
| run: | | |
| cd build | |
| cat libnetcdf.settings | |
| - name: Build All | |
| shell: bash -l {0} | |
| run: | | |
| cd build | |
| LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make -j 12 | |
| if: ${{ success() }} | |
| - name: Run Tests | |
| shell: bash -l {0} | |
| run: | | |
| cd build | |
| LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest --verbose -j 12 . | |
| if: ${{ success() }} | |
| - name: Verbose Output if CTest Failure | |
| shell: bash -l {0} | |
| run: | | |
| cd build | |
| LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest -j 12 --rerun-failed --output-on-failure -VV | |
| if: ${{ failure() }} | |
| fetch_content_cmake: | |
| needs: build-deps-serial | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| hdf5: [ 1.14.3 ] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install System dependencies | |
| shell: bash -l {0} | |
| run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev mpich libmpich-dev | |
| ### | |
| # Set Environmental Variables | |
| ### | |
| - run: echo "CMAKE_PREFIX_PATH=${HOME}/environments/${{ matrix.hdf5 }}/" >> $GITHUB_ENV | |
| - run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV | |
| ### | |
| # Fetch Cache | |
| ### | |
| - name: Fetch HDF Cache | |
| id: cache-hdf5 | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/environments/${{ matrix.hdf5 }} | |
| key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }} | |
| - name: Check Cache | |
| shell: bash -l {0} | |
| run: ls ${HOME}/environments/${{ matrix.hdf5 }} && ls ${HOME}/environments/${{ matrix.hdf5}}/lib | |
| ### | |
| # Configure and build | |
| ### | |
| - name: Run Cmake | |
| run: | | |
| cd integration_tests/fetch_content | |
| cmake -S . -B build | |
| - name: Build | |
| run: | | |
| cd integration_tests/fetch_content | |
| cmake --build build --parallel | |
| - name: Run tests | |
| run: | | |
| cd integration_tests/fetch_content/build | |
| ctest --rerun-failed --output-on-failure . --verbose |