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Commits on Feb 18, 2020

• Rerun transcriptomic-dimension-reduction module (AlexsLemonade#542)

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  cbethell

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  jaclyn-taroni

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• edit to reference gene list (AlexsLemonade#539)

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  kgaonkar6

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  jaclyn-taroni

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• Ependymoma subtyping (AlexsLemonade#490)

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  tkoganti

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  jashapiro

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• Chr instability: PR 3 of 3: Histology plots (AlexsLemonade#532)

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  cansavvy

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  jashapiro

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Commits on Feb 17, 2020

• Update molecular-subtyping-embryonal README (AlexsLemonade#538)

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  cbethell

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  jaclyn-taroni

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Commits on Feb 16, 2020

• Immune deconv (AlexsLemonade#536)

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  komalsrathi

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  jaclyn-taroni

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Commits on Feb 14, 2020

• Improve focal-cn-file-preparation documentation, filter copy neutral out of sex chromosome files (AlexsLemonade#537)

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  jaclyn-taroni

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• Add a GISTIC module; start looking at running on specific histologies (AlexsLemonade#535)

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  jaclyn-taroni

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  jashapiro

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Commits on Feb 11, 2020

• Install MATLAB Compiler Runtime on project Docker container (AlexsLemonade#531)

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  jaclyn-taroni

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  cgreene

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• Account for tp53_nf1_score when choosing biospecimens to subset for CI (AlexsLemonade#528)

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  jaclyn-taroni

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  cansavvy

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• Chr instability: PR 2 of 3: Create binned count heatmaps (AlexsLemonade#524)

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  cansavvy

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Commits on Feb 7, 2020

• Gistic file paths update with v14 (AlexsLemonade#526)

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  cansavvy

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  jaclyn-taroni

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• Chr instability: PR 1 of 3: Calculate binned breakpoint counts (AlexsLemonade#518)

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  cansavvy

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  jaclyn-taroni

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• Add shatterseek (AlexsLemonade#449)

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  yangyangclover

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  jaclyn-taroni

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• Update analyses/README and module's README to reflect changes (AlexsLemonade#525)

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  cbethell

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  jaclyn-taroni

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• Update RNA expression of copy number losses (AlexsLemonade#493)

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  cbethell

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  jaclyn-taroni

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• add v14 release docs (AlexsLemonade#507)

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  Jo Lynne Rokita

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  jaclyn-taroni

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• Updates required for v14 CI files (AlexsLemonade#515)

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  jaclyn-taroni

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  cansavvy

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• Third comparison script (AlexsLemonade#516)

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• Generate outlier thresholds (AlexsLemonade#513)

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• Fixing v14 breaking changes (AlexsLemonade#523)

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  jaclyn-taroni

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  cansavvy

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Commits on Feb 6, 2020

• Update README.md (AlexsLemonade#520)

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  Jo Lynne Rokita

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Commits on Feb 5, 2020

• PR 11 of n - Molecular subtyping - HGG (1p/19q co-deleted oligodendrogliomas only) (AlexsLemonade#466)

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  jaclyn-taroni

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• Second comparison script (AlexsLemonade#511)

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  NNoureen

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  jaclyn-taroni

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• Circos plots (AlexsLemonade#484)

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  cansavvy

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  jaclyn-taroni

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Commits on Feb 4, 2020

• First Comparison Script Telomerase Activity (AlexsLemonade#506)

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  NNoureen

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  jaclyn-taroni

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• Update files used for input in cnv-chrom-plot (AlexsLemonade#508)

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  cansavvy

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Commits on Feb 3, 2020

• PR 10 of n - Molecular Subtyping - HGG (Joining cleaned data) (AlexsLemonade#435)

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  jaclyn-taroni

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  cansavvy

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• Deprecate molecular-subtyping-SHH-tp53 (AlexsLemonade#495)

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  jaclyn-taroni

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• Update Dockerfile (AlexsLemonade#505)

  jaclyn-taroni

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• run extend updated (AlexsLemonade#494)

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  NNoureen

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  jaclyn-taroni

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Commits on Feb 2, 2020

• Remove redundant question in update-an-analysis (AlexsLemonade#498)

  jaclyn-taroni

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• PR 3 of n - Molecular subtyping embryonal tumors (Wrangle 'final' table) (AlexsLemonade#458)

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  jaclyn-taroni

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Commits on Jan 31, 2020

• Subtype chordoma (AlexsLemonade#475)

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Commits on Jan 29, 2020

• Update ATRT subtyping to use minimal set of genes (AlexsLemonade#462)

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  jaclyn-taroni

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