version 1.8-4

DESCRIPTION

@@ -1,5 +1,5 @@
 Package: mgcv
-Version: 1.8-3
+Version: 1.8-4
 Author: Simon Wood <simon.wood@r-project.org>
 Maintainer: Simon Wood <simon.wood@r-project.org>
 Title: Mixed GAM Computation Vehicle with GCV/AIC/REML smoothness
@@ -14,7 +14,7 @@ Suggests: splines, parallel, survival, MASS
 LazyLoad: yes
 ByteCompile: yes
 License: GPL (>= 2)
-Packaged: 2014-08-29 10:10:03 UTC; sw283
+Packaged: 2014-11-27 09:49:02 UTC; sw283
 NeedsCompilation: yes
 Repository: CRAN
-Date/Publication: 2014-08-29 22:07:35
+Date/Publication: 2014-11-27 13:16:04

MD5

@@ -1,21 +1,22 @@
-c0324227202a615e286343615936dd1b *ChangeLog
-149d2f3b36649e882a15d0092cf01f55 *DESCRIPTION
+0ea61afceef0bf25b8c9d74103884936 *ChangeLog
+1a88c7e031e86b1a4d2f0a3733714046 *DESCRIPTION
 eb723b61539feef013de476e68b5c50a *GPL-2
-870396939733c58c9d523cbc41f9da59 *NAMESPACE
-b5f01a8f420b0d296352d500b75e4c35 *R/bam.r
-9d5bb48cc0072b9ba638567986928a73 *R/coxph.r
+68be7e47206e4b5ee210fb6de27f8169 *NAMESPACE
+27f3c91b6ebcefafbf8f370ea38d08c9 *R/bam.r
+52ea7081e235df890d3e51198bcc3092 *R/coxph.r
 d6f40f3d2acd3e30f3a59cbc85da6bc3 *R/efam.r
-2fb8891700c1a813dc387cdce8dd817b *R/fast-REML.r
-e72ee5107056471bd2ac183003ab5e25 *R/gam.fit3.r
+a824a6e49020786a1eba60b99939eff1 *R/fast-REML.r
+065215b64c502afab215f6e97e9ec915 *R/gam.fit3.r
 6586de2772276237525c646362926f8b *R/gam.fit4.r
 e63276b78a4ff2566af2e651bfc6aa9c *R/gam.sim.r
 bd651b8eec80d83d6e0de5f47715a0de *R/gamlss.r
 449b21801a62d0d6b753e753d4861570 *R/gamm.r
-ee07c79f181f6cc17edeafc8a33ae51b *R/mgcv.r
-ed2cdcfa5c0f772bb75eee723b7294cd *R/misc.r
+739156695988beabea60d2e259073821 *R/jagam.r
+b5887ec9a16b1842918901bc5e4ecc94 *R/mgcv.r
+a0d1da72334aefd546cad58d1b2062b1 *R/misc.r
 c287514d201a02f060fee98aab1e93c8 *R/mvam.r
-4b0df0a2310fba6b38ea8164f76d0ccd *R/plots.r
-3f10d9fbae29ae28bf89499b874f9aa4 *R/smooth.r
+8e3b23448498fd03e668165ca3b01a60 *R/plots.r
+92302835adba3710624e434ad52173bf *R/smooth.r
 90f72ef91dfc2a25c262fc002f781bf7 *R/soap.r
 0c5d2acdc985d2af9de6bb736d4df2ab *R/sparse.r
 e468195a83fab90da8e760c2c3884bd3 *data/columb.polys.rda
@@ -28,7 +29,7 @@ e9b0a2e31b130cf2cb38618ec50d1919 *man/Predict.matrix.soap.film.Rd
 f12468625253dd3603907de233762fd6 *man/Rrank.Rd
 f6cadda5999c35800fd65c08d6812f7b *man/Tweedie.Rd
 80f8763baa4987579e2aa56073a9e94e *man/anova.gam.Rd
-9c392eb571b80b00fc6fada9d502b69f *man/bam.Rd
+ef84108378322022dfe6ca5d5c9c917a *man/bam.Rd
 71bde8b8caa24a36529ce7e0ac3165d8 *man/bam.update.Rd
 a2beb811b1093c5e82ef32d7de1f7d32 *man/cSplineDes.Rd
 9b4d616d1b6c4a46ca77d16cded3f806 *man/choose.k.Rd
@@ -44,7 +45,7 @@ c7561a0f2e114247955e212aeabc6ae9 *man/formXtViX.Rd
 d87ff6287d7e343ea24d2053f4724b35 *man/formula.gam.Rd
 4da4d585b329769eb44f0c7a6e7dd554 *man/fs.test.Rd
 6f405acde2d7b6f464cf45f5395113ba *man/full.score.Rd
-b113877121ece5b7e227cd07138b7623 *man/gam.Rd
+a1492616b069844ea05762687473c4fd *man/gam.Rd
 fe61dd0efab9e920c17335faf3d5764c *man/gam.check.Rd
 a65bc22f606e45d185bc375fbf5698a1 *man/gam.control.Rd
 44db24b66ce63bc16d2c8bc3f5b42ac5 *man/gam.convergence.Rd
@@ -59,23 +60,24 @@ b2ff252537dd2155524b774b2435e66e *man/gam.vcomp.Rd
 a66a814cc4c6f806e824751fda519ae0 *man/gam2objective.Rd
 717401fd7efa3b39d90418a5d1d0c216 *man/gamObject.Rd
 a2593990d6a87f7b783d0435062dec02 *man/gamSim.Rd
-3acf983ba10da78af067d4d3a1794026 *man/gamm.Rd
+1a69eb8822eac2d99f92fee8dfe0a818 *man/gamm.Rd
 df4a6db696749986fd5e20586fc9b718 *man/gaulss.Rd
 39ae109127110152e97dc9f79e08bb14 *man/get.var.Rd
 a2ea1233d43fac89e0cacbc09a8d31e2 *man/in.out.Rd
 9c461959be1272edcb98ee7e20fdc317 *man/inSide.Rd
 2f222eeeb3d7bc42f93869bf8c2af58a *man/influence.gam.Rd
 bafea2eef12fdc819f8ac1fb41d8b914 *man/initial.sp.Rd
 c00bcfe2d0b44b2ea955f3934421807c *man/interpret.gam.Rd
+ae18c335a5bb7192ad608a5a500c2794 *man/jagam.Rd
 07d2c259b9edf164f42935170b4fccd0 *man/ldTweedie.Rd
 58e73ac26b93dc9d28bb27c8699e12cf *man/linear.functional.terms.Rd
 93035193b0faa32700e1421ce8c1e9f6 *man/logLik.gam.Rd
 611f5f6acac9c5f40869c01cf7f75dd3 *man/ls.size.Rd
 19a3f7da03e76d7d2fc0a4e544564c72 *man/magic.Rd
 5169af4be5fccf9fa79b6de08e9ea035 *man/magic.post.proc.Rd
 59672d8599211ce9cf44252f92110920 *man/mgcv-FAQ.Rd
-f4c4902dc931807a14b54142d56cc0ea *man/mgcv-package.Rd
-1448336c74a9512d298f44f709a308b4 *man/mgcv-parallel.Rd
+01926b8c2bda6fc74b51f6ec7f5cc620 *man/mgcv-package.Rd
+934b90e0845a4971b97f1d67d12d61ec *man/mgcv-parallel.Rd
 00ccf213c31910cd14f1df65a300eb33 *man/model.matrix.gam.Rd
 bc9b89db7e7ff246749551c16f5f1f07 *man/mono.con.Rd
 d33914a328f645af13f5a42914ca0f35 *man/mroot.Rd
@@ -103,7 +105,7 @@ c523210ae95cb9aaa0aaa1c37da1a4c5 *man/residuals.gam.Rd
 f6f1333be2587ffef5970905b13468ea *man/rig.Rd
 7258dfc0149fff020054117fd2ee6bd8 *man/s.Rd
 c438eb3e41cb1f51e72283380145d210 *man/scat.Rd
-d07f7e4c812e8b798a969beb40dca8e2 *man/slanczos.Rd
+6f03e337d54221bc167d531e25af1eea *man/slanczos.Rd
 b5a06918956fd10f23285b453c05bdb4 *man/smooth.construct.Rd
 4a689eba97e4fed138dccb8cad13205e *man/smooth.construct.ad.smooth.spec.Rd
 76013feaf70d00976bba0154b6f2c946 *man/smooth.construct.cr.smooth.spec.Rd
@@ -118,10 +120,10 @@ a8d5eb4772641567fee15714f01a4727 *man/smooth.construct.so.smooth.spec.Rd
 8672633a1fad8df3cb1f53d7fa883620 *man/smooth.construct.tensor.smooth.spec.Rd
 3e6d88ef6a8ab21bd6f120120602dcf6 *man/smooth.construct.tp.smooth.spec.Rd
 75a042d74460dd0c6e0c0a95c1f5d3f7 *man/smooth.terms.Rd
-3064042473b909ba6bbd160c476059d3 *man/smoothCon.Rd
+8120512d52c741f8c27c2689f69b63d3 *man/smoothCon.Rd
 b55a396da77559dac553613146633f97 *man/sp.vcov.Rd
 83bd8e097711bf5bd0fff09822743d43 *man/spasm.construct.Rd
-700699103b50f40d17d3824e35522c85 *man/step.gam.Rd
+b9394812e5398ec95787c65c1325a027 *man/step.gam.Rd
 f0791d830687d6155efb8a73db787401 *man/summary.gam.Rd
 47d22ea4fe93bc0fa0f47bd262979941 *man/t2.Rd
 63e2050f9a01b12096d640e87916b78a *man/te.Rd
@@ -147,18 +149,18 @@ bd5ec325242ca6e41056c2f1f7f05bfe *po/pl.po
 56d501c682dc6699ff0803f25533e849 *src/coxph.c
 114701c0d407f946ac693da55da864da *src/gdi.c
 49af97195accb65adc75620183d39a4c *src/general.h
-94a7b06d798739744ef9342a6a7051ec *src/init.c
+761581e96a73e1bec00a9553356eaaa6 *src/init.c
 6dbd109048a3bd18b67db6230c064c21 *src/magic.c
-a6527e26dde591b838d4c3c3f5a4e036 *src/mat.c
+f45aa90d4ce295f0deebc54798dad330 *src/mat.c
 02122df2193f86e2a08f68fe5b8ff972 *src/matrix.c
 6b781cbd5b9cfee68ad30bb7ce31ef3a *src/matrix.h
 7a12ef0cbd8f5312cd67669a36d75ebf *src/mgcv.c
-0245c7d4b550d27e6c89ddc00e224a8b *src/mgcv.h
+f06b1075027c76e9a7ce483c3d70c6ad *src/mgcv.h
 00f8a024faef17f90ed04f01e736df71 *src/misc.c
 08c1706ffeec4277c484435a0644b0e3 *src/mvn.c
 90fe2ad1997db56f2293ad16c7110f88 *src/qp.c
 cd563899be5b09897d1bf36a7889caa0 *src/qp.h
 15ed450da804a9dbd0833459af1f2474 *src/soap.c
 b3ff61207cd26308abf386d6a0666320 *src/sparse-smooth.c
-7512172319ca54cbb8384f8ebc8d20bf *src/tprs.c
+75d9bf91f5c2dc536918055b6a00d93f *src/tprs.c
 5bd85bf0319a7b7c755cf49c91a7cd94 *src/tprs.h

NAMESPACE

@@ -8,19 +8,19 @@ export(anova.gam, bam, bam.update, betar, cox.ph,concurvity, cSplineDes,
        gam2objective,
        gamm, gam.check, gam.control,gam.fit3,
        gam.fit, gam.outer,gam.vcomp, gamSim , 
-       gaulss,
+       gaulss,gam.side,get.var,
        influence.gam, 
-       in.out,inSide,interpret.gam, 
-       gam.side,
-       get.var,ldTweedie,
-       initial.sp,logLik.gam,ls.size,
+       in.out,inSide,interpret.gam,initial.sp,
+       jagam, 
+       ldTweedie,
+       logLik.gam,ls.size,
        magic, magic.post.proc, model.matrix.gam, 
-        mono.con, mroot, mvn, nb, negbin, new.name, 
+       mono.con, mroot, mvn, nb, negbin, new.name, 
        notExp,notExp2,notLog,notLog2,pcls,null.space.dimension, 
        ocat,
        pen.edf,pdIdnot,pdTens,
        place.knots, plot.gam, polys.plot,print.anova.gam,
-       print.gam,print.summary.gam,predict.gam,
+       print.gam,print.summary.gam,predict.gam,predict.bam,
        PredictMat,Predict.matrix,Predict.matrix2,
        Predict.matrix.cr.smooth,
        Predict.matrix.duchon.spline,
@@ -40,6 +40,7 @@ export(anova.gam, bam, bam.update, betar, cox.ph,concurvity, cSplineDes,
        qq.gam,
        residuals.gam,rig,rTweedie, 
        Rrank,s,scat,
+       sim2jam,
        slanczos,
        smoothCon,smooth.construct,smooth.construct2,
        smooth.construct.cc.smooth.spec,
@@ -81,14 +82,18 @@ S3method(formula, gam)
 S3method(logLik, gam)
 S3method(model.matrix,gam)
 S3method(plot, gam)
+S3method(plot, jam)
 S3method(predict, gam)
 S3method(predict, bam)
+S3method(predict, jam)
 S3method(print, anova.gam)
 S3method(print, gam)
+S3method(print, jam)
 S3method(print, summary.gam)
 S3method(residuals, gam)
 S3method(summary, gam)
 S3method(vcov,gam)
+S3method(vcov,jam)
 
 S3method(coef,pdTens)
 S3method(pdConstruct,pdTens)