update query lengths, kmer table to support queries of all sizes #156
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| name: Build and Test | |
| on: [push, pull_request] | |
| jobs: | |
| check-build: | |
| runs-on: ubuntu-20.04 | |
| container: | |
| image: traviswheelerlab/awfmindex-build | |
| volumes: | |
| - ${{ github.workspace }}:/code | |
| steps: | |
| - uses: actions/checkout@v1 | |
| - run: git submodule update --init | |
| - run: cmake . | |
| - run: make | |
| check-build-mac: | |
| runs-on: macos-11 | |
| steps: | |
| - uses: actions/checkout@v1 | |
| - run: git submodule update --init | |
| - run: cmake -DCMAKE_C_COMPILER=`which gcc-10` . | |
| - run: make || true | |
| check-legacy-build: | |
| runs-on: ubuntu-20.04 | |
| container: | |
| image: traviswheelerlab/awfmindex-build | |
| volumes: | |
| - ${{ github.workspace }}:/code | |
| steps: | |
| - uses: actions/checkout@v1 | |
| - run: make -f Makefile_legacy | |
| - run: make -f Makefile_legacy static | |
| check-legacy-build-mac: | |
| runs-on: macos-11 | |
| steps: | |
| - uses: actions/checkout@v1 | |
| - run: make -f Makefile_legacy CC=`which gcc-10` | |
| - run: make -f Makefile_legacy static CC=`which gcc-10` | |
| check-format: | |
| runs-on: ubuntu-20.04 | |
| container: | |
| image: traviswheelerlab/awfmindex-build | |
| volumes: | |
| - ${{ github.workspace }}:/code | |
| steps: | |
| - uses: actions/checkout@v1 | |
| - run: ./tool/check-format.sh || true |