Develop#6

Merged

mroosmalen merged 23 commits intomainfrom

Oct 1, 2025

Commits on Dec 30, 2024

Print software versions for the whole pipeline
mroosmalen
committed

Commits on Jan 30, 2025

Changed that Lilac always realigns against the correct chr since the chr prefix is a fixed value in the script
rhagelaar
committed
changed the default value for lilac to match the van_boxtel lab defaults
rhagelaar
committed

Commits on Feb 18, 2025

Updated many modules to be more compatible with newer versions of nextflow
rhagelaar
committed
Updated part of the code in subworkflows to be up to standard for a newer version of nextflow
rhagelaar
committed

Commits on Apr 3, 2025

Revert "changed the default value for lilac to match the van_boxtel lab defaults"
rhagelaar
committed

Commits on Aug 15, 2025