PDXNet Image Repository
└───PDMR
└───Datasets
└───Dataset_PDMR
└───Dataset_WGD
└───Dataset_XTLD
└───BCM
└───Datasets
└───Dataset_PDX_TIF
└───Dataset_PT_SVS
└───HCI
└───Datasets
└───Dataset_PT_PDX
└───JAX
└───Datasets
└───Dataset_Quarantine
└───MDA
└───Datasets
└───Dataset_PT_PDX_mouse_AMG
└───Dataset_TC_PT_PDX
└───Dataset_breast_PT_PDX
└───WISTAR
└───Datasets
└───Dataset_PT_PDX
└───WUSTL
└───Datasets
└───Dataset_PDX
Dataset_PDX
└───Images
└───WU-0004-T1-X1P5_PDX_40X.svs
└───WU-0005-T1-X1P2_PDX_40X.svs
└───...
└───WU-0122-T1_X1P1_PDX_40X.svs
└───Metadata
└───PDXNETimage_metadata_wustl_all_standardized.RJM_220726.xlsx
└───wustl-svs-metadata.csv
└───Histoqc
└───histoqc_output_wustl_marked_v2.1-no-blur-no-fat-no-cover-with-pen
└───results.tsv
└───WU-0004-T1-X1P5_PDX_40X.svs
└───WU-0004-T1-X1P5_PDX_40X.svs_mask_use.png
└───WU-0004-T1-X1P5_PDX_40X.svs_thumb.png
└───WU-0004-T1-X1P5_PDX_40X.svs_bright.png
└───...
└───WU-0005-T1-X1P2_PDX_40X.svs
└───...
└───histoqc_output_wustl_unmarked_v2.1-no-blur-no-fat-no-cover-no-pen
└───aggregate
└───mask_area
└───wustl-WU-0004-T1-X1P5_PDX_40X.svs-tile-mask-overlap.csv
└───wustl-WU-0005-T1-X1P2_PDX_40X.svs-tile-mask-overlap.csv
└───...
└───Hovernet
└───WU-0004-T1-X1P5_PDX_40X_wsi
└───json
└───WU-0004-T1-X1P5_PDX_40X.json
└───mask
└───WU-0004-T1-X1P5_PDX_40X.png
└───thumb
└───WU-0004-T1-X1P5_PDX_40X.png
└───WU-0005-T1-X1P2_PDX_40X_wsi
└───...
└───WU-0122-T1_X1P1_PDX_40X_wsi
└───slide_cell_summary
└───wustl-hovernet-centroids.csv.gz
└───slide_summary
└───hov_cell_count.csv
└───hov_cell_percent.csv
└───wsi_pixel.csv
└───Inception
└───Features
└───features_WU-0004-T1-X1P5_PDX_40X.svs.csv
└───features_WU-0005-T1-X1P2_PDX_40X.svs.csv
└───...
└───features_WU-0122-T1_X1P1_PDX_40X.svs.csv