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@TaschnerMandlGroup

TaschnerMandlGroup

README.md

Welcome to the Taschner-Mandl Lab at Children's Cancer Research Institute (CCRI) in Vienna

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We are a group of experimental and computational biologists at CCRI with the goal to tackle unresolved questions of neuroblastoma pathogenesis and develop new diagnostic and therapeutic approaches to facilitate precision medicine for children with malignant tumors. For more information visit our institutional homepage.

This organization hosts analysis and software repositories supporting our research.

  • DeepFLEX: Image processing and single-cell analysis pipeline for MELC images
  • neuroblastoma: Single-cell transcriptomics & epigenomics analysis for neuroblastoma samples
  • MapMetIP: Image processing workflow for multi-modal (IF & IMC) high-plex images
  • MapMetSC: Single-cell analysis pipeline for data extracted from MapMetIP
  • ALT-FISH: Classification of ALT-FISH spots
  • AI4CAN: App for FISH image classification
  • SpatialIMC: Spatial interaction analysis in IMC images

Some repositories are currently in development and private, but will be published soon. Stay tuned.

Popular repositories Loading

  1. MapMetSC MapMetSC Public

    MAPping METastases in Neuroblastoma - spatially and temporally

    R 1

  2. TaschnerMandlGroup.github.io TaschnerMandlGroup.github.io Public

    SCSS

  3. MapMetIP MapMetIP Public

    Image processing pipeline for multi-modal images

    Python

  4. .github .github Public

  5. DeepFLEX DeepFLEX Public

    Forked from perlfloccri/DeepFLEX

    DeepFLEX: Deep learning-based single-cell analysis pipeline for FLuorescence multiplEX imaging

    Python

  6. neuroblastoma neuroblastoma Public

    Forked from csbg/neuroblastoma

    Single-cell transcriptomics and epigenomics unravel the role of monocytes in neuroblastoma bone marrow metastasis

    Jupyter Notebook

Repositories

Showing 8 of 8 repositories
  • SpotSegmentation Public
    TaschnerMandlGroup/SpotSegmentation’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 14, 2024
  • MapMetSC Public

    MAPping METastases in Neuroblastoma - spatially and temporally

    TaschnerMandlGroup/MapMetSC’s past year of commit activity
    R 1 0 0 0 Updated Oct 8, 2024
  • YAP-TAZ_study Public

    scRNA-seq analysis code for the publication Strohmenger et al., 2024

    TaschnerMandlGroup/YAP-TAZ_study’s past year of commit activity
    R 0 MIT 0 0 0 Updated Aug 28, 2024
  • MapMetIP Public

    Image processing pipeline for multi-modal images

    TaschnerMandlGroup/MapMetIP’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Aug 12, 2024
  • .github Public
    TaschnerMandlGroup/.github’s past year of commit activity
    0 0 0 0 Updated Jul 27, 2024
  • TaschnerMandlGroup.github.io Public
    TaschnerMandlGroup/TaschnerMandlGroup.github.io’s past year of commit activity
    SCSS 0 MIT 0 0 0 Updated May 10, 2024
  • neuroblastoma Public Forked from csbg/neuroblastoma

    Single-cell transcriptomics and epigenomics unravel the role of monocytes in neuroblastoma bone marrow metastasis

    TaschnerMandlGroup/neuroblastoma’s past year of commit activity
    Jupyter Notebook 0 MIT 1 0 0 Updated Dec 11, 2023
  • DeepFLEX Public Forked from perlfloccri/DeepFLEX

    DeepFLEX: Deep learning-based single-cell analysis pipeline for FLuorescence multiplEX imaging

    TaschnerMandlGroup/DeepFLEX’s past year of commit activity
    Python 0 MIT 2 0 0 Updated Jan 26, 2022

People

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