init

.gitignore

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+_site
+.sass-cache
+.jekyll-metadata

Gemfile

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+source 'https://rubygems.org'
+
+gem 'jekyll'

Gemfile.lock

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+GEM
+  remote: https://rubygems.org/
+  specs:
+    colorator (0.1)
+    ffi (1.9.10)
+    jekyll (3.1.2)
+      colorator (~> 0.1)
+      jekyll-sass-converter (~> 1.0)
+      jekyll-watch (~> 1.1)
+      kramdown (~> 1.3)
+      liquid (~> 3.0)
+      mercenary (~> 0.3.3)
+      rouge (~> 1.7)
+      safe_yaml (~> 1.0)
+    jekyll-sass-converter (1.4.0)
+      sass (~> 3.4)
+    jekyll-watch (1.3.1)
+      listen (~> 3.0)
+    kramdown (1.10.0)
+    liquid (3.0.6)
+    listen (3.0.6)
+      rb-fsevent (>= 0.9.3)
+      rb-inotify (>= 0.9.7)
+    mercenary (0.3.5)
+    rb-fsevent (0.9.7)
+    rb-inotify (0.9.7)
+      ffi (>= 0.5.0)
+    rouge (1.10.1)
+    safe_yaml (1.0.4)
+    sass (3.4.22)
+
+PLATFORMS
+  ruby
+
+DEPENDENCIES
+  jekyll
+
+BUNDLED WITH
+   1.11.2

_config.yml

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+# Welcome to Jekyll!
+#
+# This config file is meant for settings that affect your whole blog, values
+# which you are expected to set up once and rarely need to edit after that.
+# For technical reasons, this file is *NOT* reloaded automatically when you use
+# 'jekyll serve'. If you change this file, please restart the server process.
+
+# Site settings
+title: The Allan Lab
+email: your-email@domain.com
+description: > # this means to ignore newlines until "baseurl:"
+  Write an awesome description for your new site here. You can edit this
+  line in _config.yml. It will appear in your document head meta (for
+  Google search results) and in your feed.xml site description.
+baseurl: "/allanlab" # the subpath of your site, e.g. /blog
+url: ""
+
+include:
+  - .htaccess
+  - _pages
+
+sass:
+  sass_dir: _sass
+
+# Conversion
+markdown: kramdown
+highlighter: rouge
+lsi: false
+excerpt_separator: "\n\n"
+incremental: false
+
+
+# Markdown Processing
+kramdown:
+  input: GFM
+  hard_wrap: false
+  auto_ids: true
+  footnote_nr: 1
+  entity_output: as_char
+  toc_levels: 1..6
+  smart_quotes: lsquo,rsquo,ldquo,rdquo
+  enable_coderay: false

_config_dev.yml

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+# Welcome to Jekyll!
+#
+# This config file is meant for settings that affect your whole blog, values
+# which you are expected to set up once and rarely need to edit after that.
+# For technical reasons, this file is *NOT* reloaded automatically when you use
+# 'jekyll serve'. If you change this file, please restart the server process.
+
+# Site settings
+title: The Allan Lab
+email: your-email@domain.com
+description: > # this means to ignore newlines until "baseurl:"
+  Write an awesome description for your new site here. You can edit this
+  line in _config.yml. It will appear in your document head meta (for
+  Google search results) and in your feed.xml site description.
+baseurl: "" # the subpath of your site, e.g. /blog
+url: "http://yourdomain.com" # the base hostname & protocol for your site
+
+include:
+  - .htaccess
+  - _pages
+
+sass:
+  sass_dir: _sass
+
+# Conversion
+markdown: kramdown
+highlighter: rouge
+lsi: false
+excerpt_separator: "\n\n"
+incremental: false
+
+
+# Markdown Processing
+kramdown:
+  input: GFM
+  hard_wrap: false
+  auto_ids: true
+  footnote_nr: 1
+  entity_output: as_char
+  toc_levels: 1..6
+  smart_quotes: lsquo,rsquo,ldquo,rdquo
+  enable_coderay: false

_data/news.yml

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+- date: 01. July 2016
+  headline: Milan is at the strongly correlated electron GRC 2016.
+
+- date: 24. June 2016
+  headline: Felix Baumberger is visiting.
+
+- date: 17. June 2016
+  headline: Irene is at SNS2016.
+
+- date: 28. April 2016
+  headline: <b> Our results on the Mott & pseudo gap physics posted on <a href='http://arxiv.org/abs/1604.08343'>arXiv</a> ! </b>
+
+- date: 14. May 2016
+  headline: Ivan Bozovic is visiting.
+
+- date: 17. March 2016
+  headline: Koen, Irene & Vitaly present a poster at Sun Sailing Science.
+
+- date: 17. Jan 2016
+  headline: "We discover electronic order and pseudogap in a non-cuprate materal! <img src='/allanlab/images/newspic/order.png' class='img-responsive' style='max-width: 192px' />"
+
+- date: 01. Jan 2016
+  headline: Welcome Vitaly!
+
+- date: 17. June 2015
+  headline: Welcome Kees!
+
+- date: 17. June 2015
+  headline: "Maarten wins the LION image award! Check out his <a href='https://www.physics.leidenuniv.nl/index.php?id=11573&news=757&type=lion&ln=EN'>submission</a>.<img src='/allanlab/images/newspic/Contest.jpg' class='img-responsive' style='max-width:192px' />"
+
+- date: 17. June 2015
+  headline: "<b> We win a Veni grant: 800kEUR to invest in science! (<a href='http://www.news.leiden.edu/news-2015/5-vidis-for-leiden-reserachers.html'>Leiden news</a>, <a href='http://www.fom.nl/live/english/news/archives/pressreleases2015/artikel.pag?objectnumber=297954'>FOM news item</a>) </b>"
+
+- date: 10. August 2015
+  headline: "Welcome Koen and Maarten: from Master- to PhD-students"
+
+- date: 17. June 2015
+  headline: "We got our commercial STM from <a href='http://www.unisoku.com/'>Unisoku</a>, and we are already busy modifying."
+
+- date: 01. Jan 2015
+  headline: Welcome Irene, Gijsbert & Milan — our lab is officially starting!

_data/publist.yml

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+- title: Universality of pseudo gap and emergent order in lightly doped Mott insulators
+  image: Pub_M2PG.png
+  description:
+    We discover of electronic order, pseudo gap phase separation and an impurity-band Mott transition in an iridate compound. These are uncanny similarities to the cuprates ... Along the way, we gained unique knowledge on how a Mott state collapses.
+  authors:
+    I. Battisti* & K.M. Bastiaans*, V. Fedoseev, A. de la Torre, N. Iliopoulos, A. Tamai, E.C. Hunter, R.S. Perry, J. Zaanen, F. Baumberger, M.P. Allan
+  link:
+    url: http://arxiv.org/abs/1604.08343
+    display: arXiv
+  highlight: 1
+  news: 
+
+- title: Imaging Cooper pairing of heavy fermions in CeCoIn5
+  image: Pub_CeCoIn5.png
+  description:
+    We extract the gap structure of the heavy Fermion superconductor CeCoIn5, and find a d-wave gap with nodes along the (1,1) direction.
+  authors:
+    MP Allan* & F Massee*, DK Morr, J van Dyke, AW Rost, AP Mackenzie, C Petrovic, JC Davis
+  link:
+    url: http://www.nature.com/nphys/journal/vaop/ncurrent/abs/nphys2671.html
+    display: Nature Physics 9, 468 (2013) 
+  highlight: 1
+  news1: </a><a style="color:#FF0000; text-decoration:underline" href="http://www.nature.com/nphys/journal/v9/n8/full/nphys2708.html">Featured in 'News and Views' by L Taillefer</a>
+  news2: See also <a href="http://phys.org/news/2013-07-imaging-electron-pairing-simple-magnetic.html"> Phys.org</a>, <a href="http://davisgroup.lassp.cornell.edu/CeCoIn5_DoE.html">DoE headliner</a>
+
+- title: Identifying the fingerprint of antiferromagnetic spin fluctuations in iron pnictide superconductors
+  image: Pub_FP.png
+  description:
+    We discover signatures of electron-boson coupling in the spectra and in the QPI dispersion. We determine the fingerprints of different boson couplings to conclude that these signatures stem from AF spin fluctuations.
+  authors:
+    MP Allan* & Kyungmin Lee* & AW Rost*, MH Fischer, F Massee, K Kihou, C-H Lee, A Iyo, H Eisaki, T-M Chuang, AP Mackenzie, JC Davis, DJ Scalapino, E-A Kim
+  link:
+    url: http://www.nature.com/nphys/journal/v11/n2/full/nphys3187.html
+    display: Nature Physics 11, 177 (2015)
+  highlight: 1
+  news1:
+  news2: </a>See also <a href="http://www.news.cornell.edu/stories/2015/01/high-temperature-superconductor-fingerprint-found"> Cornell Chronicle </a> by Anne Ju, <a href="http://phys.org/news/2015-01-high-temperature-superconductor-fingerprint.html"> Phys.org </a> 
+
+- title: Anisotropic impurity states, quasiparticle scattering and nematic transport in underdoped Ca(Fe1−xCox)2As2
+  image: Pub_nemat2b.png
+  description:
+    We elucidate on the formation of the electronic nematic in Co-CaFe2As2, finding that the dopant atoms play a key role.
+  authors:
+    MP Allan, T-M Chuang, F Massee, Y Xie, N Ni, SL Bud’ko, GS Boebinger, Q Wang, DS Dessau, PC Canfield, MS Golden, JC Davis
+  highlight: 1    
+  link:
+    url: http://www.nature.com/nphys/journal/v9/n4/full/nphys2544.html
+    display: Nature Physics 9, 220 (2013)
+  news2: </a>See also <a href="http://www.techconnect.org/news/entry.html?id=243"> Tech Connect </a> by Jennifer Rocha, <a href="http://phys.org/news/2013-02-iron-based-superconductor-advances-theory.html"> Phys.org</a> by Bill Steele
+
+
+- title: Formation of heavy d-electron quasiparticles in Sr3Ru2O7
+  image: Pub_327.png
+  description:
+    The bands in Sr3Ru2O7 look more like in heavy fermion material than in a normal metal. We present a detailed investigation into the formation of this particular electonic structure.
+  authors:
+    MP Allan, A Tamai, E Rozbicki, MH Fischer, J Voss, PDC King, W Meevasana, S Thirupathaiah, E Rienks, J Fink, A Tennant, RS Perry, JF Mercure, MA Wang, J Lee, CJ Fennie, E-A Kim, MJ Lawler, KM Shen, AP Mackenzie, Z-X Shen, F Baumberger
+  link:
+    url: http://iopscience.iop.org/1367-2630/15/6/063029
+    display: New Journal of Physics 15, 063029 (2013) 
+    highlight: 1
+  news: <a style="color:#FF0000; text-decoration:underline" href="http://iopscience.iop.org/1367-2630/15/6/063029"> Video abstract available</a>
+
+- title: Anisotropic energy gaps of iron-based superconductivity from intraband quasiparticle interference in LiFeAs
+  image: Pub_LiFeAs.png
+  description:
+    In contrast to earlier photoemission reports, we show that the gaps in iron based superconductors are not isotropic but modulated with angle.
+  authors:
+    MP Allan⋆ & AW Rost⋆, AP Mackenzie, Y Xie, JC Davis, K Kihou, CH Lee, A Iyo, H Eisaki, T-M Chuang
+  link:
+    url: http://www.sciencemag.org/content/336/6081/563
+    display: Science 336, 563 (2012)
+  highlight: 1
+  news2: </a>See also <a href="http://www.news.cornell.edu/stories/2012/05/new-clues-how-iron-superconductors-work"> Cornell Cornincle </a> by Bill Steele, <a href="http://www.eurekalert.org/pub_releases/2012-05/dnl-avo050312.php"> Eureka Alert </a>
+
+- title: Nematic electronic structure in the “parent” state of the iron-based superconductor Ca(Fe1−xCox)2As2
+  image: Pub_nemat1.png
+  description:
+    We discovered an electronic nematic in the iron based superconductor Co-CaFe2As2! This state is by now confirmed and quite well characterised by transport, photoemission, and more SI-STM experiments.
+  authors:
+    T-M Chuang⋆ & MP Allan⋆, J Lee, Y Xie, N Ni, SL Bud’ko, GS Boebinger PC Canfield, JC Davis
+  link:
+    url: http://www.sciencemag.org/content/327/5962/181
+    display: Science 327, 181 (2010) 
+  highlight: 1
+  news1: <a style="color:#FF0000" href="http://www.sciencemag.org/content/327/5962/155"> Featured in a ‘Perspective’ by E Fradkin &amp; SA Kivelson</a> 
+  news2: See also <a  href="https://www.newscientist.com/article/dn18354-electron-spotting-could-explain-warm-superconductors/">Article on NewScientist</a> by Colin Barras
+
+
+- title: Tunable self-assembly of one-dimensional nanostructures with orthogonal directions
+  image: Pub_hBN.png
+  description:
+    Hexagonal boron nitride shows fancy superstructures on the Mo(111) surface.
+  authors:
+    MP Allan, S Berner, M Corso, T Greber, J Osterwalder
+  link:
+    url: http://www.nanoscalereslett.com/content/2/2/94
+    display: Nanoscale Research Letters 2, 94 (2007)
+  highlight: 1
+

_includes/footer.html

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+<div id="footer" class="panel">
+  <div class="panel-footer">
+	<div class="container-fluid">
+	  <div class="row">
+		<div class="col-sm-4">
+		  <p>&copy 2016 Allan Lab.</p>
+		  We are part of the <a href="https://www.physics.leidenuniv.nl/">Leiden Institute of Physics</a> at <a href="https://www.leidenuniv.nl">Leiden University</a>.
+		</div>
+		<div class="col-sm-4">
+		  <p>Funding:</p>
+		  Vidi granat from NWO (through a vidi grant)<br />
+		  Frontier of Nanosciences (NWO)
+		</div>
+		<div class="col-sm-4">
+		  <p>Contact (<a href="http://www.physics.leidenuniv.nl/travel-directions">Directions</a>):</p>
+		  Oort building, Leiden University<br />
+		  Niels Bohrweg 2<br />
+		  2333 CA Leiden<br />
+		  Netherlands
+		</div>
+	  </div>
+	</div>
+  </div>
+</div>
+
+<script src="https://ajax.googleapis.com/ajax/libs/jquery/1.11.3/jquery.min.js"></script>
+<script src="{{ site.url }}{{ site.baseurl }}/js/bootstrap.min.js"></script>

_includes/head.html

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+<head>
+  <meta charset="utf-8">
+  <meta http-equiv="X-UA-Compatible" content="IE=edge">
+  <meta name="viewport" content="width=device-width, initial-scale=1">
+
+  <title>{% if page.title %}{{ page.title | escape }}{% else %}{{ site.title | escape }}{% endif %}</title>
+  <meta name="description" content="{% if page.excerpt %}{{ page.excerpt | strip_html | strip_newlines | truncate: 160 }}{% else %}{{ site.description }}{% endif %}">
+  <link rel="stylesheet" href="{{ "/css/main.css" | prepend: site.baseurl | prepend: site.url}}">
+  <link rel="canonical" href="{{ page.url | replace:'index.html','' | prepend: site.baseurl | prepend: site.url }}">
+</head>

_includes/header copy.html

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+<div class="navbar navbar-default navbar-fixed-top" role="navigation">
+  <div class="container-fluid">
+	<div class="navbar-header">
+	  <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar-collapse-1" aria-expanded="false">
+		<span class="sr-only">Toggle navigation</span>
+		<span class="icon-bar"></span>
+		<span class="icon-bar"></span>
+		<span class="icon-bar"></span>
+	  </button>
+	  <a class="navbar-brand" href="/">Allan Lab</a>
+	</div>
+	<div class="collapse navbar-collapse" id="navbar-collapse-1">
+	  <ul class="nav navbar-nav navbar-right">
+		<li><a href="/">Home</a></li>
+		<li><a href="/team">Team</a></li>
+		<li><a href="/publications">Publications</a></li>
+		<li><a href="/research">Research</a></li>
+		<li><a href="/pictures">(Pics)</a></li>
+	  </ul>
+	</div>
+  </div>
+</div>

_includes/header.html

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+<div class="navbar navbar-default navbar-fixed-top" role="navigation">
+  <div class="container-fluid">
+	<div class="navbar-header">
+	  <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar-collapse-1" aria-expanded="false">
+		<span class="sr-only">Toggle navigation</span>
+		<span class="icon-bar"></span>
+		<span class="icon-bar"></span>
+		<span class="icon-bar"></span>
+	  </button>
+
+    <a class="navbar-brand" href="{{ site.url }}{{ site.baseurl }}/">Allan Lab @ Leiden University</a>
+	</div>
+	<div class="collapse navbar-collapse" id="navbar-collapse-1">
+	  <ul class="nav navbar-nav navbar-right">
+		<li><a href="{{ site.url }}{{ site.baseurl }}/">Home</a></li>
+		<li><a href="{{ site.url }}{{ site.baseurl }}/team">Team</a></li>
+		<li><a href="{{ site.url }}{{ site.baseurl }}/publications">Publications</a></li>
+		<li><a href="{{ site.url }}{{ site.baseurl }}/research">Research</a></li>
+		<li><a href="{{ site.url }}{{ site.baseurl }}/pictures">(Pics)</a></li>
+	  </ul>
+	</div>
+  </div>
+</div>

_includes/home_logos.html

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+<div class="row">
+  <img src="/img/Logo_Leiden.jpg" class="col-sm-4 center-block img-responsive">
+  <img src="/img/Logo_NWO.jpg" class="col-sm-4 center-block img-responsive">
+  <img src="img/Logo_Nanofront.jpg" class="col-sm-4 center-block img-responsive">
+</div>

_includes/news.html

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+
+<div class="well">
+<h4>News</h4>
+
+{% for article in site.data.news limit:9 %}
+{{ article.date }}
+<p><em>{{ article.headline }}</em></p>
+{% endfor %}
+
+<h4><a href="{{ site.url }}{{ site.baseurl }}/allnews.html">... see all News</a></h4>
+
+    </div>

_includes/research_image_layers.html

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+<div class="row">
+  <img src="/img/layers_fft.gif" width="50%" class="col-sm-3 center-block img-responsive" />
+  <img src="/img/layers_real.gif" width="50%" class="col-sm-3 center-block img-responsive" />
+</div>