Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Develop preprocessing module #94

Draft
wants to merge 3 commits into
base: dev
Choose a base branch
from
Draft

Conversation

TheLuminary
Copy link

@wondergo2017
I introduce a novel module preprocessing in the autogl.module package. For now the preprocessing module is composed of two submodules, i.e., feature_engineering and structure_engineering.
The module of preprocessing is under developing (majorly by @wondergo2017 and me @CoreLeader ), thus all other modules should NOT use this preprocessing module until it is ready to be merged and called by solver.

The base class for all preprocessing operations should be a subclass of module.preprocessing.DataPreprocessor, and overwrite the (protected) method _fit and _transform. See module/preprocessing/_data_preprocessor/_data_preprocessor.py for more details.

  • both _fit and _transform get a data argument and should return a data as well. For _transform method, the _transform method should return a transformed data. A mock operation may looks like as following.
class MockStructureEngineer(StructureEngineer):
    def _fit(self, data):
        return data
    def _transform(self, data):
          # This operation is extraordinary but this is just for a example.
        data.edge_index = torch.zeros(2, 256)
        return data
  • The realized engineer must accept provided data as either instance of autogl.data.graph.GeneralStaticGraph or PyG-style data as input.
    • The conventional PyG-style data is a data object assume to have some conventional properties, e.g., x, y, and edge_index, etc.
    • (If other developers are not familiar with autogl.data.graph.GeneralStaticGraph, I am willing to assist)

CoreLeader and others added 3 commits August 10, 2022 22:26
…odification

 [Bugfix] Fix bug for unable to modify graph topology for General Static Graph
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants