RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-shot active learning.

Professional Comprehensive Omics Data Analysis

AlphaFold 3 inference pipeline.

A flexible framework powered by ComfyUI for generating personalized Nobel Prize images.

Implementation of Alphafold 3 from Google Deepmind in Pytorch

ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.

A curated list of resources for using LLMs to develop more competitive grant applications.

Bioconductor facilities for parallel evaluation

Copy number variant detection from targeted DNA sequencing

Inferring CNV from Single-Cell RNA-Seq

Genome browser and variant annotation

Harrell Miscellaneous

A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during de novo assembly.

Flash浏览器 / Flash Browser

Publication-quality sequence logos in R

R package for creating sequence logo plots

https://www.sc-best-practices.org

Use LaTeX in R graphics.

**pyBlast** is a Python tool for conducting customizable BLAST searches. It supports local and remote searches, with extensive options for alignment tasks, filtering, and output formats. Ideal for …

R Interface to Python

Direct labels for multicolor plots in lattice or ggplot2

R Package for 2D and 3D mapping and data visualization

Survival Analysis and Visualization

📍 Repel overlapping text labels away from each other in your ggplot2 figures.

Data quality assessment and metadata reporting for data frames and database tables

Easily generate information-rich, publication-quality tables from R

Create anatograms using ggplot2

Accelerating ggplot2