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@SystemsBioinformatics

Systems Biology Lab, Vrije Universiteit Amsterdam

This is the code repository of the Systems Biology Lab. Our lab studies the molecular networks inside cells that give rise to cell behaviour and fitness.

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  1. stochpy stochpy Public

    StochPy is a versatile stochastic modeling package which is designed for stochastic simulation of molecular control networks

    Python 42 11

  2. ecmtool ecmtool Public

    Uncover organisms' metabolic blueprints

    Python 13 6

  3. elementary-mode-based-FBA-rationale elementary-mode-based-FBA-rationale Public

    Code that uses Elementary Conversion Mode computation to obtain all relevant conversions for a constraint-based optimization problem, i.e., all possible optimal yields between the constrained nutri…

    Python 1

  4. pub-data pub-data Public archive

    Repository for published, public supplementary material (archived, for new data please use a data repository)

    HTML 3

  5. cbmpy cbmpy Public

    CBMPy is a Python based platform for constraint based modelling and analysis.

    Python 19 5

  6. cbmpy-metadraft cbmpy-metadraft Public

    CBMPy Metadraft: a flexible and extensible genome-scale model reconstruction tool

    Python 2 2

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