Code and results for publication #1
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- ecYeastGEM reconstructed in prepareEnvironment
- with proteomics data integrated
- slightly increase total protein pool bound
- removed unused plots based on subsystems
- metabolism ATP flux is the ATP produced by glycolysis and ETC, but not consumed by GAEC and NGAM.
- if UB = Inf, then protein was not measured
- nitrogen metabolism: GO:0006537 (glutamate biosynthetic process), GO:0006542 (glutamine biosynthetic process), GO:0015696 (ammonium transport), GO:0019740 (nitrogen utilization) - amino acid metabolism: GO:0008652
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