Skip to content

Misc model curations - #39

Merged
haowang-bioinfo merged 10 commits into
develfrom
miscModelCurations
Oct 12, 2018
Merged

Misc model curations#39
haowang-bioinfo merged 10 commits into
develfrom
miscModelCurations

Conversation

@JonathanRob

@JonathanRob JonathanRob commented Oct 11, 2018

Copy link
Copy Markdown
Collaborator

Main improvements in this PR:

Introduces a script, miscModelCurationScript_20181012.m, which will effectively "undo" the previous deletion of two reactions (HMR_1572 and HMGCOAtx). These reactions were deleted previously as part of the miscModelCurationScript_20180921.m script, but after further investigation, it was found that there was insufficient evidence/justification for their removal. The script has been written in such a way that the reactions will be re-inserted into their original location (indices) in the model, along with all of their associated information.

An additional section is appended to this script for removal of non-standard fields (rxnKEGGID, rxnEHMNID, rxnBiGGID, rxnHepatoNET1ID, rxnREACTOMEID).

I hereby confirm that I have:

  • Tested my code on my own computer for running the model
  • Selected devel as a target branch

haowang-bioinfo and others added 6 commits October 6, 2018 09:28
Push to master for pre-release v0.4.1
Two reactions (HMR_1572 and HMGCOAtx) were deleted in a previous model update, but after further investigation, it was found that there is not sufficient evidence/reason for their removal. This script will effectively undo their deletion, restoring all of their previous information into the model.
@haowang-bioinfo
haowang-bioinfo merged commit 3925244 into devel Oct 12, 2018
@haowang-bioinfo
haowang-bioinfo deleted the miscModelCurations branch October 12, 2018 08:27
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants