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Human v1.3.2 - #168

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haowang-bioinfo merged 26 commits into
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Apr 25, 2020
Merged

Human v1.3.2#168
haowang-bioinfo merged 26 commits into
masterfrom
devel

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Main improvements in this PR:

JonathanRob and others added 26 commits March 29, 2020 13:52
The original error could not be reproduced
metabolites were imported from iHsa but are not involved in any reactions.
dash causes problems when exporting to SBML
Also adds "spontaneous" field to humanGEMRxnAssoc.JSON
feat: add gene associations to four mitochondrial transport reactions
Fix: standardize EC codes and remove orphan metabolites
update README with references/links to the Human-GEM user guide
fix: remove dash from model ID while exporting to SMBL format

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Looks good. One note: I attempted to rename the ModelFiles directory to modelFiles, though this can be difficult because git generally doesn't recognize case changes like this (requiring two commits with an intermediate "dummy" directory name). If the change doesn't update properly on master, we may need to try doing this directly on that branch. This is, of course, extremely minor.

@JonathanRob JonathanRob mentioned this pull request May 6, 2020
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migp11 added a commit to bsc-life/Human-GEM that referenced this pull request May 10, 2024
edkerk pushed a commit that referenced this pull request Mar 24, 2026
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2 participants