Human v1.3.1 - #161
Merged
Merged
Conversation
- Use ihuman variable name and mute warning message
Instead of loading the Matlab format model file, this function is adjusted to read in a model variable.
After confirmation of lossless conversion between Yaml and Matlab model files using `testConversionYaml` function, the latter is removed from current branch
This adjustment is to address the issue reported in #151.
feat: activate yaml workflow
these metabolites would sometimes be removed, leading to errors when checking tasks later on
fix: getINITModel2
replaced by docModelChanges and writeModelChanges
MATLAB cannot properly interpret non-english characters, so the name becomes difficult to read.
This function is deprecated and no longer used.
Reorganize repository directory structure
1. enable Excel format output; 2. load model from yml format.
- A bug is found line 204, and should be fixed later
fix: adjust increaseHumanGemVersion and other functions
JonathanRob
approved these changes
Mar 26, 2020
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
2 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Main improvements in this PR:
increaseHumanGemVersionfunction to adapt with the Yaml-based workflow and enablexlsxformat outputstandard-GEMtemplatedocRxnChangesandwriteRxnChangescomplementaryDataandcomplementaryScriptstodataandcode, respectivelycodesubfolder and include a dedicatedREADMEgetINITModel2to avoid removing metabolic task-associated metabolitesmasterimportHumanYamlandtestConversionYaml