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ckolbPTB wants to merge 3 commits into main from xnat-sirf

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ckolbPTB commented Dec 1, 2025 •

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Example of how to set-up xnat-mrd and xnat-interfile plugins in xnat4tests and run SIRF in a docker container inside XNAT to reconstruct test data.

Would be great if somebody could

go through the walkthrough to make sure everything works
double check the PET reconstruction: https://github.com/SyneRBI/XNAT-SIRF/blob/2b0b6bf928df2793b27e4ce4ca4673b65db19a9e/docker/reco_scripts/pet_osem_recon.py
double check the steps I do to prepare the data: https://github.com/SyneRBI/XNAT-SIRF/blob/xnat-sirf/docker/pet_recon.sh

ckolbPTB added 3 commits

December 1, 2025 20:27


          first version

fdf12b4


          add zenodo and tidy up

8ab630b


          remove superfluous block

2b0b6bf

ckolbPTB marked this pull request as ready for review

December 3, 2025 13:17

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