[docker/VM] use libinsighttoolkit5-dev as opposed to building ITK #64
Workflow file for this run
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| name: docker | |
| on: | |
| pull_request: | |
| branches: [master] | |
| paths-ignore: | |
| - '**.md' | |
| - 'VirtualBox/**' | |
| - '.github/workflows/c-cpp.yml' | |
| - 'CITATION.cff' | |
| - '.mailmap' | |
| push: | |
| branches: [master] | |
| tags: ['v**'] | |
| paths-ignore: | |
| - '**.md' | |
| - 'VirtualBox/**' | |
| - '.github/workflows/c-cpp.yml' | |
| - 'CITATION.cff' | |
| - '.mailmap' | |
| schedule: [{cron: '37 13 * * SUN'}] # Sunday at 13:37 | |
| defaults: {run: {shell: 'bash -el {0}'}} | |
| jobs: | |
| build: | |
| if: github.event_name != 'schedule' | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| type: [gpu, cpu] | |
| permissions: {contents: read, packages: write} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| ref: ${{ github.event.pull_request.head.sha || github.ref }} # fix SHA | |
| - uses: docker/metadata-action@v5 | |
| id: meta | |
| with: | |
| images: | | |
| synerbi/sirf | |
| ghcr.io/synerbi/sirf | |
| flavor: | | |
| latest=auto | |
| suffix=${{ matrix.type == 'gpu' && 'gpu,onlatest=true' || '' }} | |
| tags: | | |
| type=edge | |
| type=semver,pattern={{version}} | |
| type=semver,pattern={{major}}.{{minor}} | |
| type=semver,pattern={{major}} | |
| labels: | | |
| org.opencontainers.image.licenses=Apache-2.0${{ matrix.type == 'gpu' && ' AND BSD-3-Clause AND GPL-3.0' || '' }} | |
| - uses: docker/login-action@v3 | |
| if: github.ref == 'refs/heads/master' || startsWith(github.ref, 'refs/tags') | |
| with: | |
| registry: ghcr.io | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - uses: docker/login-action@v3 | |
| if: github.ref == 'refs/heads/master' || startsWith(github.ref, 'refs/tags') | |
| with: | |
| username: ${{ secrets.DOCKER_USR }} | |
| password: ${{ secrets.DOCKER_PWD }} | |
| - uses: jlumbroso/free-disk-space@v1.3.1 | |
| with: | |
| docker-images: false | |
| large-packages: false | |
| - name: cache | |
| uses: actions/cache@v4 | |
| with: | |
| key: ccache-docker-${{ matrix.type }}-${{ github.ref_name }}-${{ github.run_id }} | |
| restore-keys: | | |
| ccache-docker-${{ matrix.type }}-${{ github.ref_name }} | |
| ccache-docker-${{ matrix.type }} | |
| ccache-docker | |
| ccache | |
| path: docker/devel/.ccache | |
| - id: pull | |
| name: pull | |
| run: | | |
| suffix=${{ matrix.type == 'gpu' && '-gpu' || '' }} | |
| # pull core image | |
| core_image=ghcr.io/synerbi/sirf:core$suffix | |
| docker pull $core_image || : | |
| # pull sirf image | |
| docker pull ghcr.io/synerbi/sirf:${{ fromJSON(steps.meta.outputs.json).tags[0] }} || : | |
| echo "suffix=$suffix" >> "$GITHUB_OUTPUT" | |
| echo "core_image=$core_image" >> "$GITHUB_OUTPUT" | |
| - id: build | |
| name: build | |
| run: | | |
| # rebuild sirf image | |
| ./docker/compose.sh -bR${{ matrix.type == 'gpu' && 'g' || 'c' }} | |
| image=synerbi/sirf:jupyter${{ steps.pull.outputs.suffix }} | |
| echo "image=$image" >> "$GITHUB_OUTPUT" | |
| # tag potentially newer core image | |
| docker tag synerbi/jupyter:scipy-${{ matrix.type }} ${{ steps.pull.outputs.core_image }} | |
| # make a dummy Dockerfile to use with build-push-action | |
| context=$(mktemp -d) | |
| echo "FROM $image" >> "$context/Dockerfile" | |
| echo "context=$context" >> "$GITHUB_OUTPUT" | |
| - name: test CIL | |
| run: > | |
| docker run --rm -v ./.github/workflows:/gh --user $(id -u) --group-add users | |
| ${{ steps.build.outputs.image }} /gh/test_cil.sh | |
| - uses: docker/build-push-action@v5 | |
| with: | |
| context: ${{ steps.build.outputs.context }} | |
| push: ${{ github.ref == 'refs/heads/master' || startsWith(github.ref, 'refs/tags') }} | |
| tags: ${{ steps.meta.outputs.tags }} | |
| labels: ${{ steps.meta.outputs.labels }} | |
| - if: github.ref == 'refs/heads/master' | |
| name: push core image | |
| run: docker push ${{ steps.pull.outputs.core_image }} | |
| devel: | |
| if: github.event_name == 'schedule' || github.ref == 'refs/heads/master' | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| type: [gpu, cpu] | |
| permissions: {contents: read, packages: write} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| ref: ${{ github.event.pull_request.head.sha || github.ref }} # fix SHA | |
| - uses: docker/metadata-action@v5 | |
| id: meta | |
| with: | |
| images: | | |
| synerbi/sirf | |
| ghcr.io/synerbi/sirf | |
| flavor: | | |
| latest=false | |
| suffix=${{ matrix.type == 'gpu' && 'gpu,onlatest=true' || '' }} | |
| tags: devel | |
| labels: | | |
| org.opencontainers.image.licenses=Apache-2.0${{ matrix.type == 'gpu' && ' AND BSD-3-Clause AND GPL-3.0' || '' }} | |
| - uses: docker/login-action@v3 | |
| with: | |
| registry: ghcr.io | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - uses: docker/login-action@v3 | |
| with: | |
| username: ${{ secrets.DOCKER_USR }} | |
| password: ${{ secrets.DOCKER_PWD }} | |
| - uses: jlumbroso/free-disk-space@v1.3.1 | |
| with: | |
| docker-images: false | |
| large-packages: false | |
| - name: cache | |
| uses: actions/cache@v4 | |
| with: | |
| key: ccache-docker-${{ matrix.type }}-${{ github.ref_name }}-${{ github.run_id }} | |
| restore-keys: | | |
| ccache-docker-${{ matrix.type }}-${{ github.ref_name }} | |
| ccache-docker-${{ matrix.type }} | |
| ccache-docker | |
| ccache | |
| path: docker/devel/.ccache | |
| - id: pull | |
| name: pull | |
| run: | | |
| suffix=${{ matrix.type == 'gpu' && '-gpu' || '' }} | |
| # pull core image | |
| core_image=ghcr.io/synerbi/sirf:core$suffix | |
| docker pull $core_image || : | |
| # pull sirf image | |
| docker pull ghcr.io/synerbi/sirf:${{ fromJSON(steps.meta.outputs.json).tags[0] }} || : | |
| echo "suffix=$suffix" >> "$GITHUB_OUTPUT" | |
| echo "core_image=$core_image" >> "$GITHUB_OUTPUT" | |
| - id: build | |
| name: build | |
| run: | | |
| # rebuild sirf image | |
| ./docker/compose.sh -dbR${{ matrix.type == 'gpu' && 'g' || 'c' }} | |
| image=synerbi/sirf:jupyter-devel${{ steps.pull.outputs.suffix }} | |
| echo "image=$image" >> "$GITHUB_OUTPUT" | |
| - name: test CIL | |
| run: > | |
| docker run --rm -v ./.github/workflows:/gh --user $(id -u) --group-add users | |
| ${{ steps.build.outputs.image }} /gh/test_cil.sh |