Update Staging for Final 1.0

.github/workflows/run-integration-tests.yml

@@ -0,0 +1,30 @@
+name: Run SpatialPy Integration Tests
+
+on:
+  push:
+    branches: [staging, develop]
+
+jobs:
+  run-tests:
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        os: [ ubuntu-latest ]
+
+    steps:
+    - name: Initialize environment
+      uses: actions/checkout@v2
+
+    - name: Install Python
+      uses: actions/setup-python@v2
+      with:
+        python-version: '3.7'
+
+    - name: Install Python dependencies
+      run: | 
+        python3 -m pip install --upgrade pip
+        python3 -m pip install -r requirements.txt
+        python3 -m pip install coverage
+
+    - name: Run tests
+      run: coverage run test/run_integration_tests.py

.github/workflows/run-tests.yml → .github/workflows/run-unit-tests.yml

@@ -25,4 +25,4 @@ jobs:
         python3 -m pip install coverage
 
     - name: Run tests
-      run: coverage run test/run_tests.py
+      run: coverage run test/run_unit_tests.py

docs/build/html/_modules/spatialpy/core/boundarycondition.html

@@ -124,7 +124,7 @@ <h1>Source code for spatialpy.core.boundarycondition</h1><div class="highlight">
 <span class="sd">         - type_id: type (subdomain) of the partciles</span>
 <span class="sd">    Targets (one of the following must be set):</span>
 <span class="sd">        property: (str), &#39;nu&#39;, &#39;rho&#39;,&#39;v&#39;</span>
-<span class="sd">        species: (str) name of a chemical species.</span>
+<span class="sd">        species: (str) name of a chemical species. \</span>
 <span class="sd">                   Must also set deterministic=True/False flag.</span>
 
 <span class="sd">    :param xmin: x-axis coordinate lower bound of **condition**</span>
@@ -152,15 +152,15 @@ <h1>Source code for spatialpy.core.boundarycondition</h1><div class="highlight">
 <span class="sd">    and applies to deterministic simulation. **BoundaryCondition not yet implemeneted for Stochastic Species**.</span>
 <span class="sd">    :type deterministic: bool</span>
 
-<span class="sd">    :param target: Set **target** to properties, can be &#39;nu&#39; &#39;rho&#39; or &#39;v&#39; or species name</span>
+<span class="sd">    :param target: Set **target** to properties, can be &#39;nu&#39; &#39;rho&#39; or &#39;v&#39; or species name \</span>
 <span class="sd">    If species name, determinstic must also be set to True/False.</span>
 <span class="sd">    :type target: str</span>
 
 <span class="sd">    :param value: Value property will take in region defined by the conditions</span>
 <span class="sd">    :type value: float or float[3]</span>
 
 <span class="sd">    :param model: Target model of boundary condition</span>
-<span class="sd">    :type model: spatialpy.Model.Model</span>
+<span class="sd">    :type model: spatialpy.core.model.Model</span>
 <span class="sd">    &quot;&quot;&quot;</span>
 
     <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">xmin</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">xmax</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">ymin</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">ymax</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">zmin</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">zmax</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>

docs/build/html/_modules/spatialpy/core/datafunction.html

@@ -116,6 +116,8 @@ <h1>Source code for spatialpy.core.datafunction</h1><div class="highlight"><pre>
 
 <span class="sd">    :param name: Name of the Data Function.</span>
 <span class="sd">    :type name: str</span>
+
+<span class="sd">    :raises DataFunctionError: If a name is not provided.</span>
 <span class="sd">    &quot;&quot;&quot;</span>
 
     <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">name</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
@@ -128,11 +130,11 @@ <h1>Source code for spatialpy.core.datafunction</h1><div class="highlight"><pre>
         <span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">        This method must be overridden by the DataFunction subclass.</span>
 
-<span class="sd">        NOTE: The spatial location is evaulated at t=0 and is not</span>
-<span class="sd">              reevaluated as the fluid domain moves over time.</span>
+<span class="sd">        NOTE: The spatial location is evaulated at t=0 and is not \</span>
+<span class="sd">              re-evaluated as the fluid domain moves over time.</span>
 
-<span class="sd">        :param point: The x,y,z position</span>
-<span class="sd">        :type point: vector of 3 doubles</span>
+<span class="sd">        :param point: The x, y, z position.</span>
+<span class="sd">        :type point: float[3]</span>
 
 <span class="sd">        :returns: Value of function at this spatial location.</span>
 <span class="sd">        :rtype: float</span>