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Add "vol" to "Domain.set_type" #192

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Merged
merged 3 commits into from
Oct 18, 2021
Merged

Add "vol" to "Domain.set_type" #192

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1310d80
Added vol as an arg to Model.set_type.
BryanRumsey Oct 15, 2021
ed7d78d
Merge branch 'develop' into vol-in-set-type
BryanRumsey Oct 18, 2021
9b22872
Resolved review comments
BryanRumsey Oct 18, 2021
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6 changes: 5 additions & 1 deletion spatialpy/Model.py
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Original file line number Diff line number Diff line change
Expand Up @@ -237,7 +237,7 @@ def timespan(self, time_span, timestep_size=None):



def set_type(self, geometry_ivar, type_id, mass=None, nu=None, rho=None, c=None, fixed=False):
def set_type(self, geometry_ivar, type_id, vol=None, mass=None, nu=None, rho=None, c=None, fixed=False):
""" Add a type definition to the model. By default, all regions are set to
type 0. Returns the number of domain points that were tagged with this type_id

Expand All @@ -246,6 +246,8 @@ def set_type(self, geometry_ivar, type_id, mass=None, nu=None, rho=None, c=None,
:type geometry_ivar: spatialpy.Geometry.Geometry
:param type_id: (usually an int) the identifier for this type
:type type_id: int
:param vol: The volume of each particle in the type
:type vol: float
:param mass: The mass of each particle in the type
:type mass: float
:param rho: The density of each particle in the type
Expand All @@ -271,6 +273,8 @@ def set_type(self, geometry_ivar, type_id, mass=None, nu=None, rho=None, c=None,
for v_ndx in range(self.domain.get_num_voxels()):
if geometry_ivar.inside( self.domain.coordinates()[v_ndx,:], on_boundary[v_ndx]):
self.domain.type[v_ndx] = type_id
if vol is not None:
self.domain.vol[v_ndx] = vol
if mass is not None:
self.domain.mass[v_ndx] = mass
if rho is not None:
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