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7/4 Fix aaa pipeline #142

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7/4 Fix aaa pipeline #142

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402be59
7/4 fixing aaa pipeline
iv-lop Jul 4, 2025
f0ac5d4
7/4 additional gitignore
iv-lop Jul 4, 2025
b9a29e6
Merge f0ac5d4470640945a812ca78fbb1d97ad4fa27bb into 2b000963e04d6140a…
iv-lop Jul 4, 2025
174bcab
Autoformat code
iv-lop Jul 4, 2025
a13d2eb
8/15 update aorta diameters to return raw CT scan slice indices and a…
iv-lop Aug 15, 2025
88eca13
Merge branch 'fix_aaa_pipeline' of https://github.com/StanfordMIMI/Co…
iv-lop Aug 15, 2025
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iv-lop Aug 15, 2025
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1 change: 1 addition & 0 deletions .gitignore
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Expand Up @@ -23,6 +23,7 @@ docs/_build
**/test_data
**/testing_data
**/sample_data
**/ct_scan_paths
**/test_results

# Ignore images
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14 changes: 7 additions & 7 deletions bin/C2C
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Expand Up @@ -31,15 +31,15 @@ os.environ["CUDA_DEVICE_ORDER"] = "PCI_BUS_ID"
### AAA Pipeline

def AAAPipelineBuilder(path, args):
pipeline = InferencePipeline(
[
AxialCropperPipelineBuilder(path, args),
# build the “crop” pipeline and pull out its step‐classes
crop_pipeline = AxialCropperPipelineBuilder(path, args)
# now concatenate its classes with the AAA steps
classes = crop_pipeline.inference_classes + [
aaa.AortaSegmentation(),
aaa.AortaDiameter(),
aaa.AortaMetricsSaver()
]
)
return pipeline
aaa.AortaMetricsSaver(),
]
return InferencePipeline(classes)

def MuscleAdiposeTissuePipelineBuilder(args):
pipeline = InferencePipeline(
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