Support visionOS, watchOS, and macOS Builds (#17)

.github/DISCUSSION_TEMPLATE/cardinalkit.yml

@@ -1,5 +1,5 @@
 #
-# This source file is part of the Stanford Biodesign for Digital Health open-source project
+# This source file is part of the Stanford Biodesign Digital Health Group open-source organization
 #
 # SPDX-FileCopyrightText: 2022 Stanford University and the project authors (see CONTRIBUTORS.md)
 #

.github/DISCUSSION_TEMPLATE/healthkitonfhir.yml

@@ -1,5 +1,5 @@
 #
-# This source file is part of the Stanford Biodesign for Digital Health open-source project
+# This source file is part of the Stanford Biodesign Digital Health Group open-source organization
 #
 # SPDX-FileCopyrightText: 2022 Stanford University and the project authors (see CONTRIBUTORS.md)
 #

.github/DISCUSSION_TEMPLATE/ideas.yml

@@ -1,5 +1,5 @@
 #
-# This source file is part of the Stanford Biodesign for Digital Health open-source project
+# This source file is part of the Stanford Biodesign Digital Health Group open-source organization
 #
 # SPDX-FileCopyrightText: 2022 Stanford University and the project authors (see CONTRIBUTORS.md)
 #

.github/DISCUSSION_TEMPLATE/researchkitonfhir.yml

@@ -1,5 +1,5 @@
 #
-# This source file is part of the Stanford Biodesign for Digital Health open-source project
+# This source file is part of the Stanford Biodesign Digital Health Group open-source organization
 #
 # SPDX-FileCopyrightText: 2022 Stanford University and the project authors (see CONTRIBUTORS.md)
 #

.github/DISCUSSION_TEMPLATE/show-and-tell.yml

@@ -1,5 +1,5 @@
 #
-# This source file is part of the Stanford Biodesign for Digital Health open-source project
+# This source file is part of the Stanford Biodesign Digital Health Group open-source organization
 #
 # SPDX-FileCopyrightText: 2022 Stanford University and the project authors (see CONTRIBUTORS.md)
 #

.github/ISSUE_TEMPLATE/bug_report.yml

@@ -1,5 +1,5 @@
 #
-# This source file is part of the Stanford Biodesign for Digital Health open-source project
+# This source file is part of the Stanford Biodesign Digital Health Group open-source organization
 #
 # SPDX-FileCopyrightText: 2022 Stanford University and the project authors (see CONTRIBUTORS.md)
 #

.github/ISSUE_TEMPLATE/config.yml

@@ -1,5 +1,5 @@
 #
-# This source file is part of the Stanford Biodesign for Digital Health open-source project
+# This source file is part of the Stanford Biodesign Digital Health Group open-source organization
 #
 # SPDX-FileCopyrightText: 2022 Stanford University and the project authors (see CONTRIBUTORS.md)
 #

.github/ISSUE_TEMPLATE/internal_change.yml

@@ -1,5 +1,5 @@
 #
-# This source file is part of the Stanford Biodesign for Digital Health open-source project
+# This source file is part of the Stanford Biodesign Digital Health Group open-source organization
 #
 # SPDX-FileCopyrightText: 2022 Stanford University and the project authors (see CONTRIBUTORS.md)
 #

.github/ISSUE_TEMPLATE/major_feature.yml

@@ -1,5 +1,5 @@
 #
-# This source file is part of the Stanford Biodesign for Digital Health open-source project
+# This source file is part of the Stanford Biodesign Digital Health Group open-source organization
 #
 # SPDX-FileCopyrightText: 2022 Stanford University and the project authors (see CONTRIBUTORS.md)
 #

.github/ISSUE_TEMPLATE/minor_feature.yml

@@ -1,5 +1,5 @@
 #
-# This source file is part of the Stanford Biodesign for Digital Health open-source project
+# This source file is part of the Stanford Biodesign Digital Health Group open-source organization
 #
 # SPDX-FileCopyrightText: 2022 Stanford University and the project authors (see CONTRIBUTORS.md)
 #

.github/codecov.yml

@@ -1,5 +1,5 @@
 #
-# This source file is part of the Stanford Biodesign for Digital Health open-source project
+# This source file is part of the Stanford Biodesign Digital Health Group open-source organization
 #
 # SPDX-FileCopyrightText: 2022 Stanford University and the project authors (see CONTRIBUTORS.md)
 #

.github/pull_request_template.md

@@ -1,6 +1,6 @@
 <!--
 
-This source file is part of the Stanford Biodesign for Digital Health open-source project
+This source file is part of the Stanford Biodesign Digital Health Group open-source organization
 
 SPDX-FileCopyrightText: 2022 Stanford University and the project authors (see CONTRIBUTORS.md)
 

.github/release.yml

@@ -1,5 +1,5 @@
 #
-# This source file is part of the Stanford Biodesign for Digital Health open-source project
+# This source file is part of the Stanford Biodesign Digital Health Group open-source organization
 #
 # SPDX-FileCopyrightText: 2022 Stanford University and the project authors (see CONTRIBUTORS.md)
 #

.github/workflows/action-release-tag.yml

@@ -1,5 +1,5 @@
 #
-# This source file is part of the Stanford Biodesign for Digital Health open-source project
+# This source file is part of the Stanford Biodesign Digital Health Group open-source organization
 #
 # SPDX-FileCopyrightText: 2022 Stanford University and the project authors (see CONTRIBUTORS.md)
 #

.github/workflows/create-and-upload-coverage-report.yml

@@ -1,5 +1,5 @@
 #
-# This source file is part of the Stanford Biodesign for Digital Health open-source project
+# This source file is part of the Stanford Biodesign Digital Health Group open-source organization
 #
 # SPDX-FileCopyrightText: 2022 Stanford University and the project authors (see CONTRIBUTORS.md)
 #

.github/workflows/release.yml

@@ -1,5 +1,5 @@
 #
-# This source file is part of the Stanford Biodesign for Digital Health open-source project
+# This source file is part of the Stanford Biodesign Digital Health Group open-source organization
 #
 # SPDX-FileCopyrightText: 2022 Stanford University and the project authors (see CONTRIBUTORS.md)
 #

.github/workflows/reuse.yml

@@ -1,5 +1,5 @@
 #
-# This source file is part of the Stanford Biodesign for Digital Health open-source project
+# This source file is part of the Stanford Biodesign Digital Health Group open-source organization
 #
 # SPDX-FileCopyrightText: 2022 Stanford University and the project authors (see CONTRIBUTORS.md)
 #

.github/workflows/swiftlint.yml

@@ -1,5 +1,5 @@
 #
-# This source file is part of the Stanford Biodesign for Digital Health open-source project
+# This source file is part of the Stanford Biodesign Digital Health Group open-source organization
 #
 # SPDX-FileCopyrightText: 2022 Stanford University and the project authors (see CONTRIBUTORS.md)
 #

.github/workflows/test.yml

@@ -1,5 +1,5 @@
 #
-# This source file is part of the Stanford Biodesign for Digital Health open-source project
+# This source file is part of the Stanford Biodesign Digital Health Group open-source organization
 #
 # SPDX-FileCopyrightText: 2022 Stanford University and the project authors (see CONTRIBUTORS.md)
 #

.github/workflows/xcodebuild-or-fastlane.yml

@@ -1,5 +1,5 @@
 #
-# This source file is part of the Stanford Biodesign for Digital Health open-source project
+# This source file is part of the Stanford Biodesign Digital Health Group open-source organization
 #
 # SPDX-FileCopyrightText: 2022 Stanford University and the project authors (see CONTRIBUTORS.md)
 #
@@ -31,6 +31,16 @@ on:
         required: false
         type: string
         default: ''
+      destination:
+        description: 'The destination parameter that should be passed to xcodebuild. Defaults to the iOS simulator using an iPhone 14 Pro'
+        required: false
+        type: string
+        default: 'platform=iOS Simulator,name=iPhone 14 Pro'
+      resultBundle:
+        description: 'The name of the Xcode result bundle that is passed to xcodebuild. If not defined, the name of the scheme + .xcresult is used.'
+        required: false
+        type: string
+        default: ''
       test:
         description: 'A flag indicating if the tests of the Xcode project scheme should run'
         required: false
@@ -198,15 +208,20 @@ jobs:
           else
               XCODECOMMAND="build"
           fi
+
+          if ${{ inputs.resultBundle }}; then
+              RESULTBUNDLE=${{ inputs.resultBundle }}
+          else
+              RESULTBUNDLE=${{ inputs.scheme }}.xcresult
+          fi
+
           set -o pipefail \
           && xcodebuild $XCODECOMMAND \
-            -scheme ${{ inputs.scheme }} \
-            -sdk iphonesimulator \
-            -destination "name=iPhone 14 Pro" \
+            -scheme "${{ inputs.scheme }}" \
+            -destination "${{ inputs.destination }}" \
             $CODECOVERAGEFLAG \
             -derivedDataPath ".derivedData" \
-            -resultBundlePath ${{ inputs.scheme }}.xcresult \
-            CODE_SIGN_IDENTITY="" \
+            -resultBundlePath "$RESULTBUNDLE" \
             CODE_SIGNING_REQUIRED=NO \
           | xcpretty
     - name: Fastlane

.gitignore

@@ -1,5 +1,5 @@
 #
-# This source file is part of the Stanford Biodesign for Digital Health open-source project
+# This source file is part of the Stanford Biodesign Digital Health Group open-source organization
 #
 # SPDX-FileCopyrightText: 2022 Stanford University and the project authors (see CONTRIBUTORS.md)
 #

CITATION.cff

@@ -0,0 +1,22 @@
+#
+# This source file is part of the Stanford Biodesign Digital Health Group open-source organization
+#
+# SPDX-FileCopyrightText: 2022 Stanford University and the project authors (see CONTRIBUTORS.md)
+#
+# SPDX-License-Identifier: MIT
+# 
+
+cff-version: 1.2.0
+message: "If you use this software, please cite it as below."
+authors:
+- family-names: "Schmiedmayer"
+  given-names: "Paul"
+  orcid: "https://orcid.org/0000-0002-8607-9148"
+- family-names: "Ravi"
+  given-names: "Vishnu"
+  orcid: "https://orcid.org/0000-0003-0359-1275"
+- family-names: "Aalami"
+  given-names: "Oliver"
+  orcid: "https://orcid.org/0000-0002-7799-2429"
+title: "Stanford Biodesign Digital Health Group"
+url: "https://github.com/StanfordBDHG/"

CODE_OF_CONDUCT.md

@@ -1,6 +1,6 @@
 <!--
 
-This source file is part of the Stanford Biodesign for Digital Health open-source project
+This source file is part of the Stanford Biodesign Digital Health Group open-source organization
 
 SPDX-FileCopyrightText: 2022 Stanford University and the project authors (see CONTRIBUTORS.md)
 

CONTRIBUTING.md

@@ -1,6 +1,6 @@
 <!--
 
-This source file is part of the Stanford Biodesign for Digital Health open-source project
+This source file is part of the Stanford Biodesign Digital Health Group open-source organization
 
 SPDX-FileCopyrightText: 2022 Stanford University and the project authors (see CONTRIBUTORS.md)
 
@@ -10,7 +10,7 @@ SPDX-License-Identifier: MIT
 
 # Contributing Guidelines
 
-Thank you for contributing to the Stanford Biodesign for Digital Health project! We value the time and effort you invest in the open-source project!
+Thank you for contributing to one of the Stanford Biodesign Digital Health Group projects! We value the time and effort you invest in the open-source project!
 
 We use [GitHub Discussions](https://docs.github.com/en/discussions) at [https://github.com/orgs/StanfordBDHG/discussions](https://github.com/orgs/StanfordBDHG/discussions) for any discussions about the project.
 Please follow our [Code of Conduct](https://github.com/StanfordBDHG/.github/blob/main/CODE_OF_CONDUCT.md).

CONTRIBUTORS.md

@@ -1,14 +1,15 @@
 <!--
 
-This source file is part of the Stanford Biodesign for Digital Health open-source project
+This source file is part of the Stanford Biodesign Digital Health Group open-source organization
 
 SPDX-FileCopyrightText: 2022 Stanford University and the project authors (see CONTRIBUTORS.md)
 
 SPDX-License-Identifier: MIT
 
 -->
 
-# Stanford Biodesign for Digital Health .github Contributors
+# Stanford Biodesign Digital Health Group .github Contributors
 
-* [Vishnu Ravi](https://github.com/vishnuravi)
 * [Paul Schmiedmayer](https://github.com/PSchmiedmayer)
+* [Vishnu Ravi](https://github.com/vishnuravi)
+* [Oliver Aalami](https://github.com/aalami5)

FUNDING.yml

@@ -1,9 +1,9 @@
 #
-# This source file is part of the Stanford Biodesign for Digital Health open-source project
+# This source file is part of the Stanford Biodesign Digital Health Group open-source organization
 #
 # SPDX-FileCopyrightText: 2022 Stanford University and the project authors (see CONTRIBUTORS.md)
 #
 # SPDX-License-Identifier: MIT
 #
 
-custom: [Stanford Biodesign for Digital Health.stanford.edu]
+custom: [Stanford Biodesign Digital Health Group.stanford.edu]

LICENSES/MIT.txt

@@ -1,6 +1,6 @@
 MIT License
 
-Copyright (c) 2022 Stanford Biodesign for Digital Health and the project authors (see CONTRIBUTORS.md)
+Copyright (c) 2022 Stanford Biodesign Digital Health Group and the project authors (see CONTRIBUTORS.md)
 
 Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:
 

README.md

@@ -1,13 +1,101 @@
 <!--
 
-This source file is part of the Stanford Biodesign for Digital Health open-source project
+This source file is part of the Stanford Biodesign Digital Health Group open-source organization
 
 SPDX-FileCopyrightText: 2022 Stanford University and the project authors (see CONTRIBUTORS.md)
 
 SPDX-License-Identifier: MIT
 
 -->
 
-# .github
+# Stanford Biodesign Digital Health Group
+
+This repository serves as a collection of default community health files, GitHub Action workflows, templates, and information for the Stanford Biodesign Digital Health Group organization.
+
+
+## GitHub Actions
+
+This repository contains several GitHub Actions that automate and simplify the process of contributing to Stanford Biodesign Digital Health Group-related projects.
+
+
+### Test Using Xcodebuild or Run Fastlane
+
+Allows GitHub Actions to build complex Swift Packages supporting Apple platforms as well as Xcode projects with a diverse set of requirements ranging from custom commands, xcodebuild, to using Fastlane.
+You can learn more about the arguments in the [`xcodebuild-or-fastlane.yml` GitHub Action file](https://github.com/StanfordBDHG/.github/blob/main/.github/workflows/xcodebuild-or-fastlane.yml).
+
+```yml
+jobs:
+  buildandtest:
+    name: Build and Test Swift Package
+    uses: StanfordBDHG/.github/.github/workflows/xcodebuild-or-fastlane.yml@v2
+    with:
+      artifactname: TemplatePackage.xcresult
+      runsonlabels: '["macOS", "self-hosted"]'
+      scheme: TemplatePackage
+```
+
+### Merge and Upload Coverage Report
+
+Merge and upload code coverage reports to display them on codecov.io.
+You can learn more about the arguments in the [`create-and-upload-coverage-report.yml` GitHub Action file](https://github.com/StanfordBDHG/.github/blob/main/.github/workflows/create-and-upload-coverage-report.yml).
+
+```yml
+jobs:
+  uploadcoveragereport:
+    name: Upload Coverage Report
+    uses: StanfordBDHG/.github/.github/workflows/create-and-upload-coverage-report.yml@v2
+    with:
+      coveragereports: ResultBundle1.xcresult ResultBundle2.xcresult
+```
+
+### REUSE
+
+Check that all your source files conform to the REUSE specification.
+You can learn more about the arguments in the [`reuse.yml` GitHub Action file](https://github.com/StanfordBDHG/.github/blob/main/.github/workflows/reuse.yml).
+
+```yml
+jobs:
+  reuse_action:
+    name: REUSE Compliance Check
+    uses: StanfordBDHG/.github/.github/workflows/reuse.yml@v2
+```
+
+### SwiftLint
+
+Ensure that all Swift files conform to the defined style guide.
+You can learn more about the arguments in the [`swiftlint.yml` GitHub Action file](https://github.com/StanfordBDHG/.github/blob/main/.github/workflows/swiftlint.yml).
+
+```yml
+  swiftlint:
+    name: SwiftLint
+    uses: StanfordBDHG/.github/.github/workflows/swiftlint.yml@v2
+```
+
+### Action Tag Release
+
+Small GitHub Action that automatically tags releases based on semantic version tags, essential for GitHub Action repos. E.g., you tag a release for v2.4.2, and the action tags a v2 and v2.4). You can learn more about the arguments in the [`action-release-tag.yml` GitHub Action file](https://github.com/StanfordBDHG/.github/blob/main/.github/workflows/action-release-tag.yml).
+
+```yml
+jobs:
+  releasetag:
+    name: Tag Release
+    uses: StanfordBDHG/.github/.github/workflows/action-release-tag.yml@v2
+    secrets:
+      access-token: ${{ secrets.PERSONAL_ACCESS_TOKEN }}
+    with:
+      user: PaulsAutomationBot
+```
+
+
+## Continous Integration Setup
+
+The [ContinousIntegration](https://github.com/StanfordBDHG/ContinousIntegration) repository contains the setup and information about our self-hosted GitHub Action runners that is fitting the GitHub Actions found in this repository.
+
+
+## Our Research
+
+For more information, check out our website at [biodesigndigitalhealth.stanford.edu](https://biodesigndigitalhealth.stanford.edu).
+
+![Stanford Byers Center for Biodesign Logo](https://raw.githubusercontent.com/StanfordBDHG/.github/main/assets/biodesign-footer-light.png#gh-light-mode-only)
+![Stanford Byers Center for Biodesign Logo](https://raw.githubusercontent.com/StanfordBDHG/.github/main/assets/biodesign-footer-dark.png#gh-dark-mode-only)
 
-This repository serves as a collection of default community health files, GitHub Action workflows, templates, and information for the Stanford Biodesign for Digital Health organization.

SECURITY.md

@@ -1,6 +1,6 @@
 <!--
 
-This source file is part of the Stanford Biodesign for Digital Health open-source project
+This source file is part of the Stanford Biodesign Digital Health Group open-source organization
 
 SPDX-FileCopyrightText: 2022 Stanford University and the project authors (see CONTRIBUTORS.md)