Rel 10.8.1

.github/workflows/CI.yml

@@ -7,7 +7,7 @@ on:
   pull_request:
 
 env:
-  CMDSTAN: "/home/worker/cmdstan-2.34.1/"
+  CMDSTAN: "/home/worker/cmdstan-2.35.0/"
 
 jobs:
   test:
@@ -41,17 +41,17 @@ jobs:
           OLDWD=`pwd`
           cd ~
           pwd
-          wget https://github.com/stan-dev/cmdstan/releases/download/v2.34.1/cmdstan-2.34.1.tar.gz
-          tar -xzpf cmdstan-2.34.1.tar.gz
+          wget https://github.com/stan-dev/cmdstan/releases/download/v2.35.0/cmdstan-2.35.0.tar.gz
+          tar -xzpf cmdstan-2.35.0.tar.gz
           ls -lia .
-          ls -lia ./cmdstan-2.34.1
-          ls -lia ./cmdstan-2.34.1/make
-          touch ./cmdstan-2.34.1/make/local
-          echo "STAN_THREADS=true" > ./cmdstan-2.34.1/make/local
+          ls -lia ./cmdstan-2.35.0
+          ls -lia ./cmdstan-2.35.0/make
+          touch ./cmdstan-2.35.0/make/local
+          echo "STAN_THREADS=true" > ./cmdstan-2.35.0/make/local
           make -C $CMDSTAN build
           cd $OLDWD
         env:
-          CMDSTAN: "/home/runner/cmdstan-2.34.1/"
+          CMDSTAN: "/home/runner/cmdstan-2.35.0/"
       - uses: actions/checkout@v2
       - uses: julia-actions/setup-julia@v1
         with:
@@ -70,7 +70,7 @@ jobs:
       - uses: julia-actions/julia-buildpkg@latest
       - uses: julia-actions/julia-runtest@latest
         env:
-          CMDSTAN: "/home/runner/cmdstan-2.34.1/"
+          CMDSTAN: "/home/runner/cmdstan-2.35.0/"
       - uses: julia-actions/julia-processcoverage@v1
         if: matrix.version == '1' && matrix.os == 'ubuntu-latest' && matrix.num_threads == 1
       - uses: codecov/codecov-action@v1

INSTALLING_CMDSTAN.md

@@ -6,7 +6,7 @@
 git clone https://github.com/stan-dev/cmdstan.git --recursive cmdstan
 
 # or e.g.
-# git clone -b v2.34.1 https://github.com/stan-dev/cmdstan.git --recursive cmdstan
+# git clone -b v2.35.0 https://github.com/stan-dev/cmdstan.git --recursive cmdstan
 ```
 
 ## Customize cmdstan.

Project.toml

@@ -3,7 +3,7 @@ uuid = "682df890-35be-576f-97d0-3d8c8b33a550"
 license = "MIT"
 desc = "Illustrate StanJulia's interface options to cmdstan"
 authors = ["Rob J Goedman <goedman@icloud.com>"]
-version = "10.8.0"
+version = "10.8.1"
 
 [deps]
 AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5"

README.md

@@ -54,7 +54,7 @@ The StanJulia ecosystem includes 2 additional packages, StanQuap.jl (to compute
 
 ## Options for multi-threading and multi-chaining
 
-Stan.jl v10 is intended to use Stan's `cmdstan` v2.34.1+ and StanSample.jl v6.
+Stan.jl v10 is intended to use Stan's `cmdstan` v2.35.0+ and StanSample.jl v6.
 
 StanSample.jl v6+ enables the use of c++ multithreading in the `cmdstan` binary. To activate multithreading in `cmdstan` this needs to be specified during the build process of `cmdstan`. I typically create a `path_to_cmdstan_directory/make/local` file (before running `make -j9 build`) containing `STAN_THREADS=true`. For an example, see the `.github/CI.yml` script
 
@@ -98,7 +98,7 @@ Set the CMDSTAN environment variable so that Julia can find the cmdstan installa
 
 ### Vesrsion 10.5-10.7
 
-1. Cmdstan-2.34.1
+1. Cmdstan-2.35.0
 2. Moved LKJ example from StanSample.jl to Stan.jl
 3. Package updates
 4. Added Cholesky factor test

docs/src/INSTALLATION.md

@@ -24,9 +24,9 @@ to `./julia/config/startup.jl`. Remember to use `expanduser()` if you use `~` in
 
 I typically prefer cmdstan not to include the cmdstan version number in the above path to cmdstan (no update needed when the cmdstan version is updated).
 
-Currently tested with cmdstan 2.34.1.
+Currently tested with cmdstan 2.35.0.
 
-Note: StanSample.jl v6, supports multithreading in the `cmdstan` binary and requires cmdstan v2.34.1 and up. To activate multithreading in `cmdstan` this needs to be specified during the build process of `cmdstan`. 
+Note: StanSample.jl v6, supports multithreading in the `cmdstan` binary and requires cmdstan v2.35.0 and up. To activate multithreading in `cmdstan` this needs to be specified during the build process of `cmdstan`. 
 
 ### Conda based installation walkthrough for running Stan from Julia on Windows
 

docs/src/INTRO.md

@@ -12,7 +12,7 @@ The StanJulia ecosystem includes 2 additional packages, StanQuap.jl (to compute
 
 ## Options for multi-threading and multi-chaining
 
-Stan.jl v9 is intended to use Stan's `cmdstan` v2.34.1+ and StanSample.jl v6.
+Stan.jl v9 is intended to use Stan's `cmdstan` v2.35.0+ and StanSample.jl v6.
 
 StanSample.jl v6 enables the use of c++ multithreading in the `cmdstan` binary. To activate multithreading in `cmdstan` this needs to be specified during the build process of `cmdstan`. I typically create a `path_to_cmdstan_directory/make/local` file (before running `make -j9 build`) containing `STAN_THREADS=true`. For an example, see the `.github/CI.yml` script