Re-test ImageMagick 7

.browserslistrc

@@ -1 +1 @@
-> 1%
+defaults

.dockerignore

@@ -9,7 +9,6 @@
 .otto*
 *.orig
 *.sql
-.ruby-version
 *.md
 *.orig
 .DS_Store
@@ -48,5 +47,5 @@ public/packs
 public/assets
 
 spec
-.travis
+.github
 k8s

.github/.dockerignore

@@ -0,0 +1 @@
+*

.travis/Dockerfile.db → .github/docker-tests/Dockerfile.postgres10

@@ -1,5 +1,7 @@
 FROM mdillon/postgis:10
 
+ENV POSTGRES_HOST_AUTH_METHOD=trust
+
 RUN {\
   echo "psql -U postgres -c 'CREATE ROLE travis SUPERUSER CREATEDB CREATEROLE INHERIT LOGIN;' && \
         psql -U postgres -c 'CREATE DATABASE travis;' && \

.github/docker-tests/Dockerfile.postgres12

@@ -0,0 +1,9 @@
+FROM postgis/postgis:12-3.0
+
+ENV POSTGRES_HOST_AUTH_METHOD=trust
+
+RUN {\
+  echo "psql -U postgres -c 'CREATE ROLE travis SUPERUSER CREATEDB CREATEROLE INHERIT LOGIN;' && \
+        psql -U postgres -c 'CREATE DATABASE travis;' && \
+        psql -U travis -c 'CREATE EXTENSION postgis; CREATE EXTENSION postgis_topology;'"; \
+} > /docker-entrypoint-initdb.d/travis.sh

.github/docker-tests/docker-compose.yml

@@ -0,0 +1,56 @@
+version: "2.1"
+services:
+  taxonworks:
+    build: ./docker-image-taxonworks
+    container_name: tw_container
+    depends_on:
+      db:
+        condition: service_healthy
+    ports:
+      - "127.0.0.1:80:80" # local:docker
+    links:
+      - db
+    environment:
+      - RAILS_ENV=production
+      - SERVER_NAME=localhost
+      - POSTGRES_HOST=db
+      - POSTGRES_DB=travis
+      - POSTGRES_USER=travis
+      - NGINX_SECRET_KEY=travis-nginx-secret
+      - SECRET_KEY_BASE=93cd9bcf60b5f3550071463e28b25fb163e5b8ccb7c877900e5edfecab14871e082975a19f63db3540d3d38ce67f9ff59dd7dd6d3218500658b877f7d7d23dd7
+      - TW_EXCEPTION_NOTIFICATION_EMAIL_PREFIX='"[TW-Error] "'
+      - TW_EXCEPTION_NOTIFICATION_SENDER_ADDRESS='"\"notifier\" <notifier@example.com>"'
+      - TW_EXCEPTION_RECIPIENTS=exceptions@example.com
+      - TW_ACTION_MAILER_SMTP_SETTINGS_ADDRESS=smtp.example.com
+      - TW_ACTION_MAILER_SMTP_SETTINGS_PORT=25
+      - TW_ACTION_MAILER_SMTP_SETTINGS_DOMAIN=example.com
+      - TW_ACTION_MAILER_URL_HOST=taxonworks
+      - TW_MAIL_DOMAIN=example.com
+      - TW_PATHS_STAGING=/staging
+      - TW_PATHS_BACKUP=/backup
+      - TW_SANDBOX_MODE=true
+    healthcheck:
+      test: ["CMD", "exe/docker_health_check.sh", "300", "80"]
+      timeout: 305s
+      interval: 10s
+      retries: 3
+  db:
+    build:
+      context: .
+      dockerfile: "Dockerfile.postgres${PG_VERSION}"
+    healthcheck:
+      test: ["CMD", "pg_isready", "-U", "postgres", "-h", "db"]
+      interval: 1s
+      timeout: 3s
+      retries: 30
+  test:
+    build: ./docker-image-test
+    stdin_open: true
+    tty: true
+    depends_on:
+      taxonworks:
+        condition: service_healthy
+    links:
+      - taxonworks
+    environment:
+      - REVISION=${REVISION}

.github/docker-tests/docker-image-taxonworks/Dockerfile

@@ -0,0 +1,8 @@
+FROM sfgrp/taxonworks
+
+COPY init.rb /app/exe
+COPY should_not_run_job.rb /app/app/jobs
+
+RUN { echo "bundle exec rails r /app/exe/init.rb"; } >> /etc/my_init.d/init.sh
+
+RUN echo "===[Built from revision `cat /app/REVISION`"]===

.github/docker-tests/docker-image-taxonworks/init.rb

@@ -0,0 +1,37 @@
+user = User.create!(
+  name: 'John Doe',
+  email: 'admin@example.com',
+  password: 'taxonworks',
+  password_confirmation: 'taxonworks',
+  is_administrator: true,
+  self_created: true
+)
+
+project = Project.create(
+  name: "test_project",
+  by: user
+)
+
+ProjectMember.create!(
+  project: project,
+  user: user,
+  by: user
+)
+
+taxon_name = Protonym.create!(
+  name: "Testidae",
+  rank_class: Ranks.lookup(:iczn, 'Family'),
+  parent: project.root_taxon_name,
+  project: project,
+  by: user
+)
+
+otu = Otu.create!(
+  name: 'test_otu',
+  taxon_name: taxon_name,
+  project: project,
+  by: user
+)
+
+# Verify we don't run all queues
+ShouldNotRunJob.perform_later(otu)

.github/docker-tests/docker-image-taxonworks/should_not_run_job.rb

@@ -0,0 +1,7 @@
+class ShouldNotRunJob < ApplicationJob
+  queue_as :should_not_run
+
+  def perform(otu)
+    otu.destroy!
+  end
+end

.github/docker-tests/docker-image-test/.rspec

@@ -0,0 +1 @@
+--require spec_helper

.github/docker-tests/docker-image-test/Dockerfile

@@ -0,0 +1,28 @@
+FROM ruby:2.7.2
+
+RUN apt-get update 
+RUN apt-get install -y curl bzip2 unzip default-jre \
+                       libgtk-3-0 libgtk-3-dev libdbus-glib-1-2 libxt6 # Firefox requirements
+
+RUN curl -sL 'https://download.mozilla.org/?product=firefox-79.0&lang=en-US&os=linux64' | \
+    tar -xjf - -C /usr/bin
+
+RUN /usr/bin/firefox/firefox --version
+
+ENV PATH /usr/bin/firefox/:$PATH
+
+RUN mkdir /app
+
+WORKDIR /app
+
+RUN wget -q \
+    'https://github.com/browserup/browserup-proxy/releases/download/v2.0.1/browserup-proxy-2.0.1.zip' \
+&&  unzip browserup-proxy-2.0.1.zip
+
+COPY Gemfile .
+
+RUN bundle install -j3
+
+COPY . .
+
+#CMD ["bundle", "exec", "rspec", "-fd"]

.github/docker-tests/docker-image-test/Gemfile

@@ -0,0 +1,7 @@
+source 'https://rubygems.org'
+
+gem 'selenium-webdriver', '~> 3.142', '>= 3.142.3'
+gem 'geckodriver-helper', '~> 0.24.0'
+gem 'browsermob-proxy', '~> 0.3.1'
+gem 'rspec', '~> 3.8'
+gem 'capybara', '~> 3.29'

.github/docker-tests/docker-image-test/spec/spec_helper.rb

@@ -0,0 +1,105 @@
+require 'capybara/rspec'
+# This file was generated by the `rspec --init` command. Conventionally, all
+# specs live under a `spec` directory, which RSpec adds to the `$LOAD_PATH`.
+# The generated `.rspec` file contains `--require spec_helper` which will cause
+# this file to always be loaded, without a need to explicitly require it in any
+# files.
+#
+# Given that it is always loaded, you are encouraged to keep this file as
+# light-weight as possible. Requiring heavyweight dependencies from this file
+# will add to the boot time of your test suite on EVERY test run, even for an
+# individual file that may not need all of that loaded. Instead, consider making
+# a separate helper file that requires the additional dependencies and performs
+# the additional setup, and require it from the spec files that actually need
+# it.
+#
+# See http://rubydoc.info/gems/rspec-core/RSpec/Core/Configuration
+
+RSpec.configure do |config|
+
+  config.include Capybara::DSL
+
+  # rspec-expectations config goes here. You can use an alternate
+  # assertion/expectation library such as wrong or the stdlib/minitest
+  # assertions if you prefer.
+  config.expect_with :rspec do |expectations|
+    # This option will default to `true` in RSpec 4. It makes the `description`
+    # and `failure_message` of custom matchers include text for helper methods
+    # defined using `chain`, e.g.:
+    #     be_bigger_than(2).and_smaller_than(4).description
+    #     # => "be bigger than 2 and smaller than 4"
+    # ...rather than:
+    #     # => "be bigger than 2"
+    expectations.include_chain_clauses_in_custom_matcher_descriptions = true
+  end
+
+  # rspec-mocks config goes here. You can use an alternate test double
+  # library (such as bogus or mocha) by changing the `mock_with` option here.
+  config.mock_with :rspec do |mocks|
+    # Prevents you from mocking or stubbing a method that does not exist on
+    # a real object. This is generally recommended, and will default to
+    # `true` in RSpec 4.
+    mocks.verify_partial_doubles = true
+  end
+
+  # This option will default to `:apply_to_host_groups` in RSpec 4 (and will
+  # have no way to turn it off -- the option exists only for backwards
+  # compatibility in RSpec 3). It causes shared context metadata to be
+  # inherited by the metadata hash of host groups and examples, rather than
+  # triggering implicit auto-inclusion in groups with matching metadata.
+  config.shared_context_metadata_behavior = :apply_to_host_groups
+
+# The settings below are suggested to provide a good initial experience
+# with RSpec, but feel free to customize to your heart's content.
+=begin
+  # This allows you to limit a spec run to individual examples or groups
+  # you care about by tagging them with `:focus` metadata. When nothing
+  # is tagged with `:focus`, all examples get run. RSpec also provides
+  # aliases for `it`, `describe`, and `context` that include `:focus`
+  # metadata: `fit`, `fdescribe` and `fcontext`, respectively.
+  config.filter_run_when_matching :focus
+
+  # Allows RSpec to persist some state between runs in order to support
+  # the `--only-failures` and `--next-failure` CLI options. We recommend
+  # you configure your source control system to ignore this file.
+  config.example_status_persistence_file_path = "spec/examples.txt"
+
+  # Limits the available syntax to the non-monkey patched syntax that is
+  # recommended. For more details, see:
+  #   - http://rspec.info/blog/2012/06/rspecs-new-expectation-syntax/
+  #   - http://www.teaisaweso.me/blog/2013/05/27/rspecs-new-message-expectation-syntax/
+  #   - http://rspec.info/blog/2014/05/notable-changes-in-rspec-3/#zero-monkey-patching-mode
+  config.disable_monkey_patching!
+
+  # This setting enables warnings. It's recommended, but in some cases may
+  # be too noisy due to issues in dependencies.
+  config.warnings = true
+
+  # Many RSpec users commonly either run the entire suite or an individual
+  # file, and it's useful to allow more verbose output when running an
+  # individual spec file.
+  if config.files_to_run.one?
+    # Use the documentation formatter for detailed output,
+    # unless a formatter has already been configured
+    # (e.g. via a command-line flag).
+    config.default_formatter = "doc"
+  end
+
+  # Print the 10 slowest examples and example groups at the
+  # end of the spec run, to help surface which specs are running
+  # particularly slow.
+  config.profile_examples = 10
+
+  # Run specs in random order to surface order dependencies. If you find an
+  # order dependency and want to debug it, you can fix the order by providing
+  # the seed, which is printed after each run.
+  #     --seed 1234
+  config.order = :random
+
+  # Seed global randomization in this process using the `--seed` CLI option.
+  # Setting this allows you to use `--seed` to deterministically reproduce
+  # test failures related to randomization by passing the same `--seed` value
+  # as the one that triggered the failure.
+  Kernel.srand config.seed
+=end
+end