The bundle names contained in the atlas are used across different places in the SlicerDMRI/ORG-Atlas/WMA ecosystem. The bundles correspond to the ones in Table 3 in https://doi.org/10.1016/j.neuroimage.2018.06.027.
The bundles can be found in this ORG-Atlas repository documentation:
https://github.com/SlicerDMRI/ORG-Atlases/blob/master/Tracts-in-ORG-800FC-100HCP.md
Which, in turn, is referenced in the SlicerDMRI documentation website:
https://github.com/SlicerDMRI/slicerdmri.github.io/blob/master/atlas/index.md
Rendered in:
http://dmri.slicer.org/atlases/
At the same time, WMA contains a hard-coded list/dictionary of such bundles:
https://github.com/SlicerDMRI/whitematteranalysis/blob/9850ab110521f3ce7d9b575e084fa227da9bbf6b/bin/wm_append_clusters_to_anatomical_tracts.py#L99C14-L99C14
And a PR was submitted to list the bundles in the WMA repository:
SlicerDMRI/whitematteranalysis#123
Ideally, all this information should dwell at a single place (a JSON, CSV or Python file), and be pulled/scraped from there, including into the website documentation pages. Its discoverability and visibility should also be improved.
The bundle names contained in the atlas are used across different places in the SlicerDMRI/ORG-Atlas/WMA ecosystem. The bundles correspond to the ones in Table 3 in https://doi.org/10.1016/j.neuroimage.2018.06.027.
The bundles can be found in this ORG-Atlas repository documentation:
https://github.com/SlicerDMRI/ORG-Atlases/blob/master/Tracts-in-ORG-800FC-100HCP.md
Which, in turn, is referenced in the SlicerDMRI documentation website:
https://github.com/SlicerDMRI/slicerdmri.github.io/blob/master/atlas/index.md
Rendered in:
http://dmri.slicer.org/atlases/
At the same time, WMA contains a hard-coded list/dictionary of such bundles:
https://github.com/SlicerDMRI/whitematteranalysis/blob/9850ab110521f3ce7d9b575e084fa227da9bbf6b/bin/wm_append_clusters_to_anatomical_tracts.py#L99C14-L99C14
And a PR was submitted to list the bundles in the WMA repository:
SlicerDMRI/whitematteranalysis#123
Ideally, all this information should dwell at a single place (a JSON, CSV or Python file), and be pulled/scraped from there, including into the website documentation pages. Its discoverability and visibility should also be improved.