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[bugfix] only check read structures for sample barcodes if demultiple… #35

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merged 2 commits into from
Jan 11, 2023
Merged

[bugfix] only check read structures for sample barcodes if demultiple… #35

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[bugfix] only check read structures for sample barcodes if demultiple…
nh13 Jan 10, 2023
89d2cb4
Merge branch 'main' into bugfix/no-demux
nh13 Jan 10, 2023
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12 changes: 7 additions & 5 deletions src/lib/run.rs
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Original file line number Diff line number Diff line change
Expand Up @@ -68,11 +68,13 @@ pub fn run(opts: Opts) -> Result<()> {
&opts.output_dir.to_string_lossy()
);
ensure!(!opts.read_structures.is_empty(), "At least one read structure must be specified");
ensure!(
opts.sample_barcode_in_fastq_header
|| opts.read_structures.iter().any(|s| s.sample_barcodes().count() > 0),
"No sample barcodes found in read structures"
);
if !is_no_demux {
ensure!(
opts.sample_barcode_in_fastq_header
|| opts.read_structures.iter().any(|s| s.sample_barcodes().count() > 0),
"No sample barcodes found in read structures"
);
}
ensure!(
opts.read_structures.iter().any(|s| s.templates().count() > 0),
"No templates found in read structures"
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