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Input can be a path prefix #24

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merged 11 commits into from
Nov 27, 2022
Merged

Input can be a path prefix #24

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09e70ed
start on code to infer read information from FASTQ file name
nh13 Nov 7, 2022
10e8033
wip: slurp in from a path prefix
nh13 Nov 15, 2022
ed43458
adding some docs and tests
nh13 Nov 15, 2022
1f6a9c7
add docs
nh13 Nov 15, 2022
bb54362
update readme
nh13 Nov 15, 2022
638703c
Update src/lib/run.rs
nh13 Nov 15, 2022
645a73d
Apply suggestions from code review
nh13 Nov 17, 2022
b7aeec3
fix ordering
nh13 Nov 17, 2022
e48af07
review fixes
nh13 Nov 17, 2022
b640792
Update src/lib/run.rs
nh13 Nov 17, 2022
7542c8d
review fixups
nh13 Nov 17, 2022
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Update src/lib/run.rs 
Co-authored-by: Tim Fennell <tfenne@tfenne.com>
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@nh13 @tfenne
nh13 and tfenne committed Nov 17, 2022
commit b64079255c34b58ac930d48de27d34853342c3e4
2 changes: 1 addition & 1 deletion src/lib/run.rs
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Original file line number Diff line number Diff line change
Expand Up @@ -114,7 +114,7 @@ pub fn run(opts: Opts) -> Result<()> {
opts.read_structures
.iter()
.all(|s| s.sample_barcodes().all(read_structure::ReadSegment::has_length)),
"The Read Structure must have sample barcode segments with fixed lengths"
"Sample barcode segments in read structures must have fixed lengths."
);
ensure!(
is_no_demux
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