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This repository was archived by the owner on Jan 29, 2026. It is now read-only.
This repository was archived by the owner on Jan 29, 2026. It is now read-only.

Unable to download the reference genome #21

@DittmanC

Description

@DittmanC

library("SigProfilerMatrixGeneratorR")

Attaching package: ‘SigProfilerMatrixGeneratorR’

The following object is masked from ‘package:devtools’:

install

install('GRCh37', rsync=FALSE, bash=TRUE)
Tool | Installed


curl | True
wget | True
rsync | True
INFO - Downloading GRCh37...
INFO - Attempt to download from alexandrovlab failed: [Errno 110] Connection timed out
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 02:10 0
curl: (28) Failed to connect to alexandrovlab-ftp.ucsd.edu port 21 after 131046 ms: Could not connect to server
ERROR - Curl download failed with error: Command '['curl', '-o', '/oncowd01/disk1/group_WD/user/dittman/miniconda3/envs/spmg_r/lib/python3.10/site-packages/SigProfilerMatrixGenerator/references/chromosomes/tsb/GRCh37.tar.gz', 'ftp://alexandrovlab-ftp.ucsd.edu/pub/tools/SigProfilerMatrixGenerator//GRCh37.tar.gz']' returned non-zero exit status 28..

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