added way to avid unneeded plotting

SegataLab · May 3, 2021 · 7f5789b · 7f5789b
1 parent 837fa09
commit 7f5789b
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/CRISPR_spacers_lookup/parse_spacers-blast_results.py b/CRISPR_spacers_lookup/parse_spacers-blast_results.py
@@ -286,11 +286,11 @@ def WFT(groupItem):
 
 ##PLOTS ##
 ##PLOTS ##
-
+log("Saving Pivot")
+pivot.to_csv(args.outdir +'/' + SIG + '_report_counts.csv',sep='\t')
 
 if args.plots:
-	log("Initiate Plots")
-	pivot.to_csv(args.outdir +'/' + SIG + '_report_counts.csv',sep='\t')
+	log("Plotting")
 
 	import seaborn as sns
 	import matplotlib.pyplot as plt