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Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

Incubator for useful bioinformatics code, primarily in Python and R

Written by Emily Curd (eecurd@g.ucla.edu), Jesse Gomer (jessegomer@gmail.com), Gaurav Kandlikar (gkandlikar@ucla.edu), Zack Gold (zjgold@ucla.edu), Max Ogden (max@maxogden.com), Lenore Pipes (lpipe…

MetaPathways v2.0: A master-worker model for environmental Pathway/Genome Database construction on grids and clouds

PTP model for species delimitation

Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool

Paegan - The Python CDM for Met/Ocean data

Bioinformatic pipeline that clusters sequences from NGS datasets and estimates the frequencies of each cluster in each sample

Transport module for Paegan