Merge pull request #98 from SciML/pl/exlicit_init_assignments

support kwargs[:defaults] in the ReactionSystem constructor
SciML · Dec 2, 2022 · 6c53920 · 6c53920
2 parents cf275f9 + a3a147c
commit 6c53920
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diff --git a/Project.toml b/Project.toml
@@ -1,7 +1,7 @@
 name = "SBMLToolkit"
 uuid = "86080e66-c8ac-44c2-a1a0-9adaadfe4a4e"
 authors = ["paulflang", "anandijain"]
-version = "0.1.17"
+version = "0.1.18"
 
 [deps]
 Catalyst = "479239e8-5488-4da2-87a7-35f2df7eef83"

diff --git a/src/systems.jl b/src/systems.jl
@@ -37,6 +37,10 @@ function Catalyst.ReactionSystem(model::SBML.Model; kwargs...)  # Todo: requires
                                                         Dict(Catalyst.DEFAULT_IV.val => 0)))
         push!(raterules_subs, rhs ~ o.lhs)
     end
+    if haskey(kwargs, :defaults)
+        defs = ModelingToolkit._merge(defs, kwargs[:defaults])
+        kwargs = filter(x -> !isequal(first(x), :defaults), kwargs)
+    end
     constraints_sys = ODESystem(vcat(algrules, raterules_subs, obsrules_rearranged),
                                 IV; name = gensym(:CONSTRAINTS),
                                 continuous_events = get_events(model))