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Bump the all-julia-packages group across 1 directory with 19 updates #393

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@dependabot dependabot bot commented on behalf of github Jan 2, 2026

Updates the requirements on ForwardDiff, GPUArraysCore, StaticArrays, TOML, Adapt, CUDA, OpenCL, JLArrays, Statistics, BenchmarkTools, StochasticDiffEq, OrdinaryDiffEq, SafeTestsets, Optimization, DiffEqDevTools, JET, Zygote, OptimizationOptimisers and pocl_jll to permit the latest version.
Updates ForwardDiff to 1.3.1

Release notes

Sourced from ForwardDiff's releases.

v1.3.1

ForwardDiff v1.3.1

Diff since v1.3.0

Merged pull requests:

Commits

Updates GPUArraysCore to 0.2.0

Commits

Updates StaticArrays to 1.9.16

Release notes

Sourced from StaticArrays's releases.

v1.9.16

StaticArrays v1.9.16

Diff since v1.9.15

Merged pull requests:

Closed issues:

  • Avoid piracy (#1248)
  • getindex return type (#1319)
  • Bug/numerical instability in exp/_exp returning NaN (for at least Float32); not in sync with Base/LinearAlgebra (#1322)
Commits

Updates TOML to 1.0.3

Commits

Updates Adapt to 4.4.0

Release notes

Sourced from Adapt's releases.

v4.4.0

Adapt v4.4.0

Diff since v4.3.0

Merged pull requests:

Commits
  • df3f72e Add some missed types to WrappedArray (#95)
  • cf6f6d4 Update Project.toml
  • 944774b Bump version.
  • 00b0ca3 Define adapt_structure for CartesianIndices (#93)
  • c80a6ac Add adapt definitions for SparseArrays (#91)
  • a18368b Formatter: fix merge-base with forks.
  • ef12a32 Formatter: use comments instead of code suggestions.
  • 29c5ee7 Switch formatting job to a different suggest action.
  • 447e7b8 Add formatting action.
  • bcc7559 Bump codecov/codecov-action from 4 to 5 (#89)
  • Additional commits viewable in compare view

Updates CUDA to 5.9.5

Release notes

Sourced from CUDA's releases.

v5.9.5

CUDA v5.9.5

Diff since v5.9.4

Merged pull requests:

Changelog

Sourced from CUDA's changelog.

CUDA.jl release notes

In development: CUDA.jl 4.0

Breaking changes

  • CUDNN and CUTENSOR have been split off into separate packages (#1624). This should improve load times, since most users do not rely on the functionality from these modules.

  • Binaries (like the CUDA runtime, CUDNN, etc) are now provided through first-class JLL packages (#1629). This makes it possible to build JLLs for applications and libraries that rely on the CUDA runtime. As a result, the JULIA_CUDA_USE_BINARYBUILDER and JULIA_CUDA_VERSION environment variables have been replaced with Preferences.jl-based settings; refer to the documentation for more information.

New features

...

Commits

Updates OpenCL to 0.10.8

Release notes

Sourced from OpenCL's releases.

v0.10.8

OpenCL v0.10.8

Diff since v0.10.7

Merged pull requests:

Closed issues:

  • support vectorized math intrinsics (#376)
Commits

Updates JLArrays to 0.3.0

Commits
  • 2b00163 Merge pull request #136 from JuliaGPU/tb/one
  • 1049323 Merge pull request #137 from ranocha/update_travis
  • 3fdfbd6 Merge pull request #138 from ranocha/update_readme
  • 9b97847 Make testsuite easier to reuse.
  • ebcf8a0 update link to appveyor
  • 058bb69 allow tests using Julia v1.0 (Travis)
  • a27dcc4 Enable allowscalar(false) testing for JLArray.
  • bb83e17 Restructure the testsuite a little.
  • 2439b75 Remove double endlines from license doc.
  • e7fce5b Merge pull request #135 from JuliaGPU/tb/one
  • Additional commits viewable in compare view

Updates Statistics to 1.11.1

Release notes

Sourced from Statistics's releases.

v1.11.1

Statistics v1.11.1

Diff since v1.11.0

Merged pull requests:

Closed issues:

  • The quantile function can return incorrect results for integer arrays (Int8, Int16, Int32) (#119)
Commits

Updates BenchmarkTools to 1.6.3

Release notes

Sourced from BenchmarkTools's releases.

v1.6.3

BenchmarkTools v1.6.3

Diff since v1.6.2

Merged pull requests:

Commits

Updates StochasticDiffEq to 6.87.0

Release notes

Sourced from StochasticDiffEq's releases.

v6.87.0

StochasticDiffEq v6.87.0

Diff since v6.86.1

Merged pull requests:

Commits
  • 2b4e6ec Update Project.toml
  • 8f7334b Merge pull request #648 from ChrisRackauckas-Claude/fix-tauleaping-dispatch
  • 3d0360e Fix TauLeaping dispatch after JumpProcesses.jl PR #514
  • 71fc4ff Merge pull request #647 from SciML/os/support-OrdinaryDiffEqCore@2
  • ae35a6b support OrdinaryDiffEqCore@2
  • 4f72065 Fix markdown syntax in docstrings (#646)
  • cf88135 Merge pull request #645 from SciML/dmw/unpack
  • 01398cc Remove UnPack
  • 82c3e0b Update Project.toml
  • e95d98c Merge pull request #644 from ChrisRackauckas-Claude/remove-nlsolve-dependency
  • Additional commits viewable in compare view

Updates OrdinaryDiffEq to 6.105.0

Release notes

Sourced from OrdinaryDiffEq's releases.

v6.105.0

OrdinaryDiffEq v6.105.0

Diff since v6.104.0

Merged pull requests:

Closed issues:

  • Using ArrayPartition of VectorOfArrays gives wrong results (#2728)
  • Cannot disable Jacobian sparsity pattern checking (#2924)
  • Uninferred variable in perform_step! for Rosenbrock (#2925)
Commits
  • 08e1065 Merge pull request #2944 from ChrisRackauckas-Claude/bump-minor-versions
  • 3ec06b5 Bump minor version of all packages
  • fbb34ab Merge pull request #2943 from ChrisRackauckas-Claude/fix-jet-test-resolution
  • 4330e3c Fix all JET v0.11 warnings in OrdinaryDiffEqFIRK (28/28 resolved)
  • d505242 Fix JET v0.11 static analysis warnings in OrdinaryDiffEqFIRK
  • ba7ec59 Fix JET v0.11 static analysis warnings in OrdinaryDiffEqNonlinearSolve and Or...
  • 73fbbc3 Fix JET v0.11 static analysis warnings about potentially undefined variables
  • a0684ef Update ODEProblemLibrary compat from 0.1.8 to 1.0 across 15 packages
  • a688533 Merge pull request #2941 from ChrisRackauckas-Claude/claude/rebase-hw-dae-gpu...
  • b600432 improve algebraic idx collection
  • Additional commits viewable in compare view

Updates SafeTestsets to 0.1.0

Release notes

Sourced from SafeTestsets's releases.

v0.1.0

SafeTestsets v0.1.0

Diff since v0.0.1

Closed issues:

  • Macro in test undefined (#3)
  • Using include() with a computed value (#7)

Merged pull requests:

Commits
  • f7897d5 Update Project.toml
  • 4cc3962 Update Project.toml
  • 4b6882e Update Project.toml
  • 36da15d Merge pull request #9 from YingboMa/myb/onemorelevel
  • 08d1b17 Update README.md
  • 5f24b73 Make inline testing backward compatible
  • 667b675 Merge pull request #8 from staticfloat/sf/modern_project_toml
  • ab306b0 Update package to moden Julia Project.toml format
  • e553edc Merge pull request #2 from JuliaTagBot/master
  • f4714be Install TagBot as a GitHub Action
  • Additional commits viewable in compare view

Updates Optimization to 5.3.0

Release notes

Sourced from Optimization's releases.

v5.3.0

Optimization v5.3.0

Diff since v5.2.0

Merged pull requests:

Closed issues:

  • OptimizationLBFGSB.LBFGSB() produces wrong results with retcode: Success (#1094)
Changelog

Sourced from Optimization's changelog.

v4 Breaking changes

  1. The main change in this breaking release has been the way mini-batching is handled. The data argument in the solve call and the implicit iteration of that in the callback has been removed, the stochastic solvers (Optimisers.jl and Sophia) now handle it explicitly. You would now pass in a DataLoader to OptimizationProblem as the second argument to the objective etc (p) if you want to do minibatching, else for full batch just pass in the full data.

  2. The support for extra returns from objective function has been removed. Now the objective should only return a scalar loss value, hence callback doesn't take extra arguments other than the state and loss value.

Commits
  • c107ff4 Merge pull request #1106 from SciML/dependabot/github_actions/actions/cache-5
  • 5681002 Merge pull request #1109 from ChrisRackauckas-Claude/bump-to-v1
  • 16f51b2 build: bump OptimizationIpopt, OptimizationMOI, OptimizationMadNLP to v1.0
  • 3840011 Merge pull request #1108 from ChrisRackauckas-Claude/version-bumps-mtkv11
  • 7ead7c2 build: bump minor versions for packages changed in MTKv11 update
  • c627183 Merge pull request #1107 from AayushSabharwal/as/mtk-v11
  • 9803414 build: bump SciMLBase compat for OptimizationMOI
  • a1d5b0c test: fix bounds specification in test
  • 5d3fc1d refactor: update OptimizationMOI to MTKBase
  • b13f70f build: bump DI compat in OptimizationBase
  • Additional commits viewable in compare view

Updates DiffEqDevTools to 2.49.0

Release notes

Sourced from DiffEqDevTools's releases.

v2.49.0

DiffEqDevTools v2.49.0

Diff since v2.48.0

Merged pull requests:

Commits
  • 2d99e07 Update Project.toml
  • deca843 Merge pull request #163 from SciML/ChrisRackauckas-patch-3
  • 0068782 Increase number of trajectories from 100k to 1M for analyticalless convergence
  • 2536029 Merge pull request #162 from ChrisRackauckas-Claude/migrate-to-dependabot
  • 64bc80e Remove CompatHelper.yml (replaced by Dependabot)
  • bdea549 Update dependabot.yml to add Julia ecosystem support
  • 80f7874 Merge pull request #161 from SciML/dependabot/github_actions/actions/checkout-6
  • 480d8e4 Bump actions/checkout from 4 to 6
  • 6074f3b [ci skip] Ignore crate-ci/typos patch and minor updates in dependabot
  • 7ff6d31 Merge pull request #158 from ChrisRackauckas/fix-formatting
  • Additional commits viewable in compare view

Updates JET to 0.11.3

Release notes

Sourced from JET's releases.

v0.11.3

JET v0.11.3

Diff since v0.11.2

Merged pull requests:

Closed issues:

  • no matching method found with Vector (#761)
  • JET tests broken on 1.112.2 (#786)
Changelog

Sourced from JET's changelog.

[0.11.3]

Changed

  • Updated Revise dependency version to v3.13

[0.11.2]

Changed

  • Parallelized report_package: Method signature analysis in report_package is now parallelized using Julia's multithreading, providing significant speedup on multi-core systems.

    With --threads=4,2

    • Benchmark on report_package(JET): 52.07s → 17.75s (~3x faster)
    • Benchmark on report_package(CSV): 44.23s → 19.57s (~2x faster)

[0.11.1]

Changed

  • Added CodeTracking v3 as a compatible version.

Internal

  • Refactored the project file to use the [workspace] for the docs/test environment of JET. This allows running e.g. julia --project=./test test/runtests.jl or julia --project=./docs docs/make.jl successfully.

[0.11.0]

Changed

  • Major improvement to report_package: Switched to a Revise.jl-based aviatesk/JET.jl#763

    • Incremental analysis: Analysis results are now cached and reused across multiple runs. When you analyze the same package again, only methods affected by code changes are re-analyzed, while unchanged methods reuse their cached results. This dramatically reduces analysis time for iterative development workflows.

      E.g. Incremental analysis on JET itself

      Screen.Recording.2025-10-23.at.03.01.14.mov

    • Improved robustness: The new implementation leverages Revise's battle-tested infrastructure for tracking package definitions, providing much more reliable analysis coverage across diverse code patterns compared to the previous custom code loading mechanism.

    • Breaking change: report_package now requires a Module argument instead of accepting a package name as AbstractString. Users must now load the target package before analysis. See the deprecated section for more details.

    • Limitation: As a trade-off of the Revise-based approach, report_package can no longer analyze packages that fail to load. Previously, report_package could atl least report top-level errors for such packages (though it couldn't perform inference-based analysis). Now users must fix loading errors before applying JET analysis via report_package. These errors are typically straightforward to fix by examining the error output from using MyPkg or Pkg.precompile().

... (truncated)

Commits
  • 377fa53 version 0.11.3
  • fe6ca15 Adjust to Revise v3.13 (#794)
  • c5fbd43 fixup! fixup! virtualprocess: Collect richer metadata for method signatures
  • 5ea5915 Remove unnecessary [source] sections from test Project.toml
  • 576a5eb fixup! virtualprocess: Collect richer metadata for method signatures
  • 040af8f virtualprocess: Improve SignatureInfo.src type stability
  • 897873b virtualprocess: Collect richer metadata for method signatures
  • cf77ed7 analyzer: Fix unused variable and type handling in error reporting
  • 8a958e7 Remove refresh_local_cache parameter from ToplevelAbstractAnalyzer
  • d777836 Bump actions/upload-artifact from 5 to 6 (#787)
  • Additional commits viewable in compare view

Updates Zygote to 0.7.10

Release notes

Sourced from Zygote's releases.

v0.7.10

Zygote v0.7.10

Diff since v0.7.9

Merged pull requests:

Commits

@dependabot
Bump the all-julia-packages group across 1 directory with 19 updates
0d3fe21 
Updates the requirements on [ForwardDiff](https://github.com/JuliaDiff/ForwardDiff.jl), [GPUArraysCore](https://github.com/JuliaGPU/GPUArrays.jl), [StaticArrays](https://github.com/JuliaArrays/StaticArrays.jl), [TOML](https://github.com/JuliaLang/TOML.jl), [Adapt](https://github.com/JuliaGPU/Adapt.jl), [CUDA](https://github.com/JuliaGPU/CUDA.jl), [OpenCL](https://github.com/JuliaGPU/OpenCL.jl), [JLArrays](https://github.com/JuliaGPU/GPUArrays.jl), [Statistics](https://github.com/JuliaStats/Statistics.jl), [BenchmarkTools](https://github.com/JuliaCI/BenchmarkTools.jl), [StochasticDiffEq](https://github.com/SciML/StochasticDiffEq.jl), [OrdinaryDiffEq](https://github.com/SciML/OrdinaryDiffEq.jl), [SafeTestsets](https://github.com/YingboMa/SafeTestsets.jl), [Optimization](https://github.com/SciML/Optimization.jl), [DiffEqDevTools](https://github.com/SciML/DiffEqDevTools.jl), [JET](https://github.com/aviatesk/JET.jl), [Zygote](https://github.com/FluxML/Zygote.jl), [OptimizationOptimisers](https://github.com/SciML/Optimization.jl) and [pocl_jll](https://github.com/JuliaBinaryWrappers/pocl_jll.jl) to permit the latest version.

Updates `ForwardDiff` to 1.3.1
- [Release notes](https://github.com/JuliaDiff/ForwardDiff.jl/releases)
- [Commits](JuliaDiff/ForwardDiff.jl@v0.0.2...v1.3.1)

Updates `GPUArraysCore` to 0.2.0
- [Release notes](https://github.com/JuliaGPU/GPUArrays.jl/releases)
- [Commits](JuliaGPU/GPUArrays.jl@v0.0.1...v0.2.0)

Updates `StaticArrays` to 1.9.16
- [Release notes](https://github.com/JuliaArrays/StaticArrays.jl/releases)
- [Commits](JuliaArrays/StaticArrays.jl@v0.0.1...v1.9.16)

Updates `TOML` to 1.0.3
- [Release notes](https://github.com/JuliaLang/TOML.jl/releases)
- [Commits](https://github.com/JuliaLang/TOML.jl/commits)

Updates `Adapt` to 4.4.0
- [Release notes](https://github.com/JuliaGPU/Adapt.jl/releases)
- [Commits](JuliaGPU/Adapt.jl@v0.1.0...v4.4.0)

Updates `CUDA` to 5.9.5
- [Release notes](https://github.com/JuliaGPU/CUDA.jl/releases)
- [Changelog](https://github.com/JuliaGPU/CUDA.jl/blob/master/NEWS.md)
- [Commits](JuliaGPU/CUDA.jl@v0.1.0...v5.9.5)

Updates `OpenCL` to 0.10.8
- [Release notes](https://github.com/JuliaGPU/OpenCL.jl/releases)
- [Changelog](https://github.com/JuliaGPU/OpenCL.jl/blob/master/NEWS.md)
- [Commits](JuliaGPU/OpenCL.jl@v0.1.1...v0.10.8)

Updates `JLArrays` to 0.3.0
- [Release notes](https://github.com/JuliaGPU/GPUArrays.jl/releases)
- [Commits](JuliaGPU/GPUArrays.jl@v0.0.1...v0.3.0)

Updates `Statistics` to 1.11.1
- [Release notes](https://github.com/JuliaStats/Statistics.jl/releases)
- [Commits](JuliaStats/Statistics.jl@v1.4.0...v1.11.1)

Updates `BenchmarkTools` to 1.6.3
- [Release notes](https://github.com/JuliaCI/BenchmarkTools.jl/releases)
- [Commits](JuliaCI/BenchmarkTools.jl@v0.0.1...v1.6.3)

Updates `StochasticDiffEq` to 6.87.0
- [Release notes](https://github.com/SciML/StochasticDiffEq.jl/releases)
- [Commits](SciML/StochasticDiffEq.jl@v0.0.1...v6.87.0)

Updates `OrdinaryDiffEq` to 6.105.0
- [Release notes](https://github.com/SciML/OrdinaryDiffEq.jl/releases)
- [Commits](SciML/OrdinaryDiffEq.jl@v0.0.1...v6.105.0)

Updates `SafeTestsets` to 0.1.0
- [Release notes](https://github.com/YingboMa/SafeTestsets.jl/releases)
- [Commits](YingboMa/SafeTestsets.jl@v0.0.1...v0.1.0)

Updates `Optimization` to 5.3.0
- [Release notes](https://github.com/SciML/Optimization.jl/releases)
- [Changelog](https://github.com/SciML/Optimization.jl/blob/master/NEWS.md)
- [Commits](SciML/Optimization.jl@v0.1.1...v5.3.0)

Updates `DiffEqDevTools` to 2.49.0
- [Release notes](https://github.com/SciML/DiffEqDevTools.jl/releases)
- [Commits](SciML/DiffEqDevTools.jl@v0.0.1...v2.49.0)

Updates `JET` to 0.11.3
- [Release notes](https://github.com/aviatesk/JET.jl/releases)
- [Changelog](https://github.com/aviatesk/JET.jl/blob/master/CHANGELOG.md)
- [Commits](aviatesk/JET.jl@v0.0.1...v0.11.3)

Updates `Zygote` to 0.7.10
- [Release notes](https://github.com/FluxML/Zygote.jl/releases)
- [Commits](FluxML/Zygote.jl@v0.2.0...v0.7.10)

Updates `OptimizationOptimisers` to 0.3.15
- [Release notes](https://github.com/SciML/Optimization.jl/releases)
- [Changelog](https://github.com/SciML/Optimization.jl/blob/master/NEWS.md)
- [Commits](https://github.com/SciML/Optimization.jl/commits)

Updates `pocl_jll` to 7.1.0+1
- [Release notes](https://github.com/JuliaBinaryWrappers/pocl_jll.jl/releases)
- [Commits](https://github.com/JuliaBinaryWrappers/pocl_jll.jl/commits)

---
updated-dependencies:
- dependency-name: ForwardDiff
  dependency-version: 1.3.1
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: GPUArraysCore
  dependency-version: 0.2.0
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: StaticArrays
  dependency-version: 1.9.16
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: TOML
  dependency-version: 1.0.3
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: Adapt
  dependency-version: 4.4.0
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: CUDA
  dependency-version: 5.9.5
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: OpenCL
  dependency-version: 0.10.8
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: JLArrays
  dependency-version: 0.3.0
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: Statistics
  dependency-version: 1.11.1
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: BenchmarkTools
  dependency-version: 1.6.3
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: StochasticDiffEq
  dependency-version: 6.87.0
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: OrdinaryDiffEq
  dependency-version: 6.105.0
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: SafeTestsets
  dependency-version: 0.1.0
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: Optimization
  dependency-version: 5.3.0
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: DiffEqDevTools
  dependency-version: 2.49.0
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: JET
  dependency-version: 0.11.3
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: Zygote
  dependency-version: 0.7.10
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: OptimizationOptimisers
  dependency-version: 0.3.15
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: pocl_jll
  dependency-version: 7.1.0+1
  dependency-type: direct:production
  dependency-group: all-julia-packages
...

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@dependabot dependabot bot added dependencies Pull requests that update a dependency file julia Pull requests that update julia code labels Jan 2, 2026
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